Glyma13g18680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g18680

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22348449
stop:	22350447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54220	AT	Annotation by Michelle Graham. TAIR10: GRAS family transcription factor \| chr3:20070550-20072625 FORWARD LENGTH=653	SoyBase	E_val: 7.00E-135	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009956	GO-bp	Annotation by Michelle Graham. GO Biological Process: radial pattern formation	SoyBase	N/A	ISS
GO:0051457	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of protein location in nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_B9GRN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9GRN9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1LYM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g18680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18680

Paralog	Evidence	Comments
Glyma10g04421	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g124900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g18680

Limit To All Plant Sequences

>Glyma13g18680.1   sequence type=CDS   gene model=Glyma13g18680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAATGTGGGATTTGAGGTGATTCATGCAAATTATAATCCAAACATGATTCATCCACACATGCATGAAACATGGGATCACTACTCAAATACCATTACTTCCTTGCCATTTTCAGCTCCAACCCCATCAAACCCTTATCCAAAGCCAGCAACAGAAAACAACCATTGCCTTAACTTGGGGCAGAATGAACTCTGTGATTGGATGGAAGAACACATTAGTGACATCACCAAACACTTTGTTGAAGACTTACCAGAAACAACCACTTCTGATAACTTGCTTTCTAATAACCCAACAGGGGTTGTTTCCCATCACAACCTTGGTGTTCCCTCACTACTTTCACCCAACTTCACCCAAAGAAAACCCTCATGTTTTAGACCCCAGTTTGAGTCCTTCACCAACGATCCCCCAAACTTCAATCTTCACATTCAAACAAACACCTCAACTTTAGATCAAAACAAACACAATGTTTATGATCAAGGGTTGAACCTAATAACCCTTTTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTAGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCATACAAAGCATCATGTGCTGAACGTGTTGTTGCTTACTTTGCAAAAGCCATGACTAGCAGGGTGATGAATTCATGGCTTGGAGTGTGTTCCCCTTTGGTTGATCACAAAAGCATAAACTCAGCATTCCAAGTGTTCAACAACATTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAAGCAATTCTAGAAGCAGTGAGTCATTGTGACAGCATTCACATCATTGACTTGGACATCATGCAAGGGCTTCAATGGCCGGCTTTTTTCCACATCTTAGCCACAAGAATGGAGGGTAAACCAAAAGTCACAATGACAGGTTTGGGAGCCTCAATGGAACTCCTTGTTGAAACAGGAAAACAACTCACAAACTTTGCAAGAAGGCTTGGCTTGTCACTGAAGTTTCACCCCATTGCAACAAAGTTTGGGGAAGTAATTGATGTGTCCATGCTTCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTGCAGCATTCACTGTATGATGCAACTGGACCAGATTGGAAAACACTGAGACTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTAAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTGCCTCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCATACTTACACAATGATGATTCAAACCGGCACCGTGTGGAGCATGGCCTTCTCTCCAGGGAGATCAACAATGTGTTGGCCATAGGAGGACCTAAGAGGAGTGGTGAAGACAATTTTAGGCAGTGGAGAAGTGAGCTTGCTAGGCACTGTTTTGTGAAGCAGGTTCCATTGAGTGACAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCTGCTTATGGGTATAGCCTTGCGCAAGTTGAGGGAACTTTAAGGCTTGGATGGAAGGATACAAGCTTGTACACAGCTTCTGCATGGACCTGCTGTAATTCTAGCTAG

Predicted protein sequences of Glyma13g18680

Limit To All Plant Sequences

>Glyma13g18680.1   sequence type=predicted peptide   gene model=Glyma13g18680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNVGFEVIHANYNPNMIHPHMHETWDHYSNTITSLPFSAPTPSNPYPKPATENNHCLNLGQNELCDWMEEHISDITKHFVEDLPETTTSDNLLSNNPTGVVSHHNLGVPSLLSPNFTQRKPSCFRPQFESFTNDPPNFNLHIQTNTSTLDQNKHNVYDQGLNLITLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHKSINSAFQVFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGKPKVTMTGLGASMELLVETGKQLTNFARRLGLSLKFHPIATKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVASLHYYSTLFDSLGAYLHNDDSNRHRVEHGLLSREINNVLAIGGPKRSGEDNFRQWRSELARHCFVKQVPLSDNSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCCNSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain