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Report for Sequence Feature Glyma13g18660

Feature Type:gene_model
Chromosome:Gm13
Start:22323091
stop:22327225
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03905AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:993478-995594 FORWARD LENGTH=290 SoyBaseE_val: 4.00E-156ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG2355 KOG Predicted ABC-type transport, ATPase component/CCR4 associated factor JGI ISS
PTHR12847Panther UNCHARACTERIZED JGI ISS
PF00005PFAM ABC transporter JGI ISS
UniRef100_B9GRP1UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter family protein n=1 Tax=Populus trichocarpa RepID=B9GRP1_POPTR SoyBaseE_val: 7.00E-167ISS
UniRef100_UPI0000D8969BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0000D8969B related cluster n=1 Tax=unknown RepID=UPI0000D8969B SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g18660 not represented in the dataset

Glyma13g18660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g124700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g18660.1   sequence type=CDS   gene model=Glyma13g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGCTCCCTCTCTGGCAATGGTGGTTCCACAACAATGGCGGCAGAAAACGAAGATTCCTGCGGAATCCGCGTCACCGGCATGCAATTCTCCTACGACGTGCAGCAACCGCCGCTCTTCCTCGACTTCAACCTCAACGTCTCTCCCGGATCCCGCTGCCTCCTCGTCGGTGCCAATGGATCCGGAAAGACGACTTTGCTGAAGATTCTGGCGGGGAAGCACATGGTTGGAGGAAGAGACGTTGTGCGCGTCTTGAGTGGTTCCGCTTTTCACGACACTCAGCTCGTTTGTAGCGGAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAGTTGAGGGTGCTGATCCAGAAAGGAGAGATAAGTTAATTGAGCTGCTTGATATTGATCTACAGTGGCGAATGCATAAGGTATCTGATGGGCAGCGGCGTCGAGTGCAAATCTGTCTTGGTCTTCTTCATCCGTACAAGGTTCTCTTGCTGGATGAGGTTACTGTGGATCTGGATGTTGTTACTCGGATGGATTTATTGGACTTCTTTAAGGAAGAATGTGAACAGAGAGAAGCTATAATCGTATATGCAACTCATATTTTTGATGGACTGGAGACATGGGCAACTCATTTGGCATACATACAAGATGGTGAACTGAGAAGAGCAGAAAAAATATCAAATGTTAAAGAGTTGAAATCTTCAACTAATCTGCTGTCTGTTGTTGAGGCCTGGCTTCGCGCTGAAACAAAGCTTGAAAAGAAGAACCCTGTCCAAAAGACTTCTGTTGCCAGTTCTCCTTTCTTTTCATCTAGACACATGGCATACTATAGATAG

>Glyma13g18660.1   sequence type=predicted peptide   gene model=Glyma13g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSSLSGNGGSTTMAAENEDSCGIRVTGMQFSYDVQQPPLFLDFNLNVSPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLSGSAFHDTQLVCSGDLAYLGGSWSKNVGSAGEIPLQGDFSAEHMIFGVEGADPERRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTRMDLLDFFKEECEQREAIIVYATHIFDGLETWATHLAYIQDGELRRAEKISNVKELKSSTNLLSVVEAWLRAETKLEKKNPVQKTSVASSPFFSSRHMAYYR*







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