SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18760 | AT | Annotation by Michelle Graham. TAIR10: chromatin remodeling 8 | chr2:8129154-8133502 FORWARD LENGTH=1187 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0387 | KOG | Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF49 | Panther | gb def: similar to caenorhabditis transcription activator, corresponds to swiss-prot acc | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_B9SV29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair and recombination protein RAD26, putative n=1 Tax=Ricinus communis RepID=B9SV29_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYM1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYM1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g18650 not represented in the dataset |
Glyma13g18650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g04403 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g124600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18650.1 sequence type=CDS gene model=Glyma13g18650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGTGTAAAGTCTGCCAATCCCGAAGACATCGAGCGCGACGTTTTGGAAAAGGCTACTAGGAATGATTTAGTGACCGTTACTGAAGTCGAAGGTAGCGCCAAGGAAGAGCGTTCTGATTTACCTGAAAATGTTGATCCATCGGCTAATGATAAAGCTGAAATTCGTCAGAAGTTGAGAGCTGTTCAATTTGAAATTGACGCGGTTGCCTCCGCCGTTGAACGGTTGAGTAATGTTGAAGATAATGAAGAATGTAGTGATGCTGGTGAGGACGGCCCAGGGCGAGGGACCGCCGAGGGTGAGTCCGATGGCAATTCGAACCTTCAGCGTGCTCTTGCTGCCGATAGGCTGAGGAGCCTGGAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGGATTTGTTCAAGGATGATGACTCCAAAAGTGCTGAGCATGAAGAATTGGTCCTTAGTTTAGTTAAGGAAGAACGGAAATCAAAGAGAAAGGTTAAAGAGGATAAAAAATTGAACAAAAGTGCAGGAAAGCGGCCTAAGAAAGTCTCGTTTGATGAGGATGCTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACTCCTTTTCATAAGTTGGAGGGCTTCGAGCGCCGCTTTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATGACGGTGACCTCGCTTCTGCCAGTATTGAAAGAGCTGCCAGATCCATGTCTGAGGCAGCAAGATCTCGCCCAACCACCAAGTTACTTGAGCCTGAAGCTGCACCAAAGCTTGATGCGCCCACTATTCCTTTTCGCAGGCTCAAGAAACCACTAAAATCTTCCAAACCTCTAGATGTGGAGCTGAATAAAGATTCAAAAAGGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTGTGAGGATTCACATCCGGAAGAAAGTGAAAACACGAATGGTTGCTTGGATTCTTCAAGTTGTGAAAATTTAGAAGAACAAGATGTTGAACTTGATGATCAGGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTCGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGGCTTGGTAAAACTGTTCAGGTCTTGTCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCCGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCAAGAAAGAAGCGAGCTAAATCTGAAGAAACAGACTATGAAAGCAATAGTAAAAGTGATAGTGATTATGAGAAAAGTGTGGCATCTAAAAGTACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGAGCAGCTGCTTGACATTCAATGGGGTTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAACAGCTACAGACTGTACACCGCATTATAATGACTGGTGCACCTATTCAGAACAAACTGACAGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTTCTGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCATTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGCGATTTAATCATGCCTTACCTTCTACGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAACTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTGCTTGAAAGGGATCATGCCTTCAATGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTAACATTTTTGAGAATTTTTTGACTACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGATTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACAGGTGCAAATAGGGTGATCATCTTCGACCCTGACTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGTATTGGTCAGAAGCGGGATGTGACAGTGTATAGGTTGATCACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGAAGTCAATGTCATTGGGACATATAAAGAAAATAAGGATAAGTATAAACATAGCCAAACTGCTGAACTGGTTTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGGTCTTTGAGAGGAAAGGGGAAAGAGAAGGTTGAACACGAACATAGTAATGGGGTTGGTGAAGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATTAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATAGCGTATCTGTTCCGACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCGTCTGTCAAGCGGAAGTTTGGATCAACTGTGAATCCCCAGTTGGTAAATAATAGCAAAGCATCTGACGAATTACCCAACAAGGGAACTAACAAGATCAATGGATTTGCTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCAGCCGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAGTTTGGTGTGTCGTCAAGTTCCACTAATCAACCAAGATCTGGAGATGTTAGATCTTCCAGGGCTACTGAAAATTCATCTGTACAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTATACAACAGCGAGGTGGCAGTTCCGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCGAAAGATCTTGCGCTGTTCAAGAATCTTTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCTATTGGGTTCTGAAACCAGACTATCAATTCTGA
>Glyma13g18650.1 sequence type=predicted peptide gene model=Glyma13g18650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEEDRILLSSLGVKSANPEDIERDVLEKATRNDLVTVTEVEGSAKEERSDLPENVDPSANDKAEIRQKLRAVQFEIDAVASAVERLSNVEDNEECSDAGEDGPGRGTAEGESDGNSNLQRALAADRLRSLEKTKAQLEKELLDLFKDDDSKSAEHEELVLSLVKEERKSKRKVKEDKKLNKSAGKRPKKVSFDEDADFDAVLDAASAGFVETERDELVRKGILTPFHKLEGFERRFQQPETSTSHNAAEEENDGDLASASIERAARSMSEAARSRPTTKLLEPEAAPKLDAPTIPFRRLKKPLKSSKPLDVELNKDSKRKKRRPLPGRKWTKRVSCEDSHPEESENTNGCLDSSSCENLEEQDVELDDQESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSEETDYESNSKSDSDYEKSVASKSTRKWESLINRVMRSESGLLITTYEQLRILGEQLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFNDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLNIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFSQISEEVNVIGTYKENKDKYKHSQTAELVSEDVAVGNDDKSERGSLRGKGKEKVEHEHSNGVGEETNILKSLFDANGIHSAMNHDLIMNAHDEEKIRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGTAGAPSSVKRKFGSTVNPQLVNNSKASDELPNKGTNKINGFAAAGASAGKALSSAELLAQIRGNQEKAIGAGLEHQFGVSSSSTNQPRSGDVRSSRATENSSVQPEVLIRKICTFIQQRGGSSDSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPDYQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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