Glyma13g18530 - SoyBase

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Report for Sequence Feature Glyma13g18530

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22177711
stop:	22180948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22480	AT	Annotation by Michelle Graham. TAIR10: prefoldin 2 \| chr3:7969080-7969526 FORWARD LENGTH=148	SoyBase	E_val: 4.00E-66	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016272	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG4098	KOG	Molecular chaperone Prefoldin, subunit 2	JGI		ISS
PTHR13303	Panther	PREFOLDIN SUBUNIT 2	JGI		ISS
PF01920	PFAM	Prefoldin subunit	JGI		ISS
UniRef100_B9RTR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit, putative n=1 Tax=Ricinus communis RepID=B9RTR3_RICCO	SoyBase	E_val: 2.00E-79	ISS
UniRef100_I1LYK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1LYK6_SOYBN	SoyBase	E_val: 5.00E-100	ISS

Expression Patterns of Glyma13g18530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g18530 not represented in the dataset	Glyma13g18530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18530

Paralog	Evidence	Comments
Glyma06g47340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g124100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g18530

Limit To All Plant Sequences

>Glyma13g18530.2   sequence type=transcript   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGATCTCCGGATTTCAGAAATCAATAATATTTCGTGAAACAAGTACTATGGTTCAAAATAAATAGTTATCAAAGTTAGTTTTTTTTTTCTTTTCCCTAAAGAGTTAGGCTCTATTGGACCGTACGATTAAGATCGTTCGGTGAAATTGATCACGCTGGTGCCGCATACCCTAGCGTTCCTGTTATTCTATTGTGGCTGAAACAAAACAGTGTTGAACGGCGAGGTAGAACGACGACCCCCTTCTGCGTTTTGACCTTCAATCTCAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGATTTGTCTATTTTTATTTTGTTTCCTCAAACTAGTAGCCAGAACTTGTCTTACAATTGGGTGCATGCAGTTTGATGATTTGTTTTATATGTAGACTAAGTGCGTGTCTGAATTAGATTCATGTTCCGTCCATATAGAAGCAAGTAAATGTAACTTCTGCATCATTTTGACGTGGTTTTGCTGCTTGAACGTGGATCCAAGACGTGTTTCCAACCACGCTCATTAGCAAGTATACCTTGATATGACCTTAAGTTTAATTGCTTTGGGCTGAAAAAAACTTATCTTCATTGGTTTGTGTTTATGTAGATTTTTGTATGCAAGACTAGAGCATATAATCGTGTGATCAAGCTATTTTGTCTCTCTTATGTATCGATATGTTTCATTTGGGGTAAAATGCTTTTCCTAAGCACCTTATGTTTAATTTGGTTTTTGAAACAATGCAGAAAGAAGTAATGGAAGAAGGTTTAAGG

>Glyma13g18530.4   sequence type=transcript   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCAATTGAACACCGTGTGTTCAGATACGTGAAAAGATTTTAGTGTTGATTCCATGTTGAAGGTTAGGCACTGCGTGAATGGAAATAATCTAATTGATGGATGAGGTTCTGTGGTTTTTGAGTTTGTTGGATATTGATTTTCGCCGTTGAAATCTAATTCTATGCCCTTGTGAGGTGTATTGGATTGCATGATTGATTTTTGTTCATCTAAAGTTTCAAACTTTACTGTTGAAGTTGAGTTAATGATTAAGCTACTAACTTGTTATCTCTTTGATCAGTGGAAAATTTGTTACATAAATTGTTGTACTCATTTGATATCAACTGTCATGGAATCATGCTCTTATGAGGTGTCAAACTTCTTGCTTTAACCTAATCCACTTCTTCCAGTGCTCTGCAACGAATTAGGTGCTTTTAATCCATTGACACCCTCAAACTAATTAGGGATCAGAAATCAGTGTCTATGTACTTGTCCTCCCTTTTGTTCAAAGGATAGGTCATGTCATTTGTTTGTATTTGTAATAACTAATAACTACTGCTGAATGCGATTTTAGATTTTACTGCTATGCTCATAATAATATAGTTAACCCAGGCATGATTTTTTTTGTGTGTGTGATCGTTGTGCTGTTTTATTTTTTTATTCCTCTTCCATCTGGCTTGCTATTTTTTTCTTTCTTCCTAAGGTATAAAATAAAAGTTATTAACTTTTAATACTCCCTGGACCATCTAATGTCTGTTTTTACAAATTTATGAAGTTTTTGGTTACTCTCACTTTCTTTGCTAAAGTGGCTACTATGCCAGCTGCTATAGTGTTTTTAGTGGTGGCCACCACCCACCAAGCAATGCATTTGGCCTTTAGATATTTGGTCTGTAAATGAACTAACTAACATCCTTTTCTTATTTATGATTGCATATCAAAATGGTCCTTCTTGAGAACCTGTGACACCTTTCTCTCGTCATTGAAGAGATGAGTACCTTTTTATTTTTTACTAAAAAGCTAGTATTAACTGATATAATTATTCCATTTATATCTAAGTTCTAAAATCAGGATAATAGATCAGAGGGTAGAAATTATCTAAAGGATCATTCAAGGTTTTAAATATCGTTCTGTTACACCAAAAACGAGTGCAATGGTTTTTCCCATCAGCGATACCGTTACAGGATGGTATTATGGAGTGAAAAGAGTTGCGGCCACAACACGGCTTCGGAAAACACTGTTTTGTTACTTTTTTCTGCCTCTTTAGAATTGAAACCTTTAGTTGGTAGCTTCACCCGTCATCAAGATTCATGAGCATAGAACCCCACCGTTCACCTACCAGACCACCACCGCTTGCATCTTCCCAATCTCTGCTCAGTAGTGATTAATTTGACTTCTGTGCATGGAGGGAAGGGGGTTTGACTGTGTGTGTGCTTGAGTTGGGTGTGCCCATGAAGGGTCAAGGGTTGGGGGATTATTGTGAAAGCTTCTTTCTTTCAATGATGTATGGTCTATAACAATATTTAGTCTCAAATCTGTTCAGCAGTTCTGTTTTCTCTTCTTGCGTCTGTTTGTGCTAGTTAAAAAATTGTGCCCCCTTGTCTTTTTTTATTCACCAAGTTGGTTATTGGTAGATTTACTTTCCAAAGTTCATTCCTTGATGGATAATTTGGTGACAACTGAAATGTAATTGCTGAATGCATAAACTTGTTAGTAGACAATTTTCATTATCAGGGGTTAATTTGATTAATTACTGAGAAATAAATGAACTCTATCTGTCTGCGGTTCATCTTATATAGAGTTTTACAAGAAAGTATAGGCAAAACACGTGAAGTTTAGCATTGTTTTGGATTTGCTTTCATATTATTTGTTGATGTTATTGCATCTTACTCTATATCTCTTCATATAATGGATAGCACTGTAAAAAATGGTTTATACTGAATTAATAGAAAGAAAAGGCTAATAATATTTGAAATGTTTTCCTAGTATACTTGTGTTTATTCTTATTACACTTCTCTTTCTTTACCTTGAGGATGCTTTATTTTCATTTGTGTAGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGATTTGTCTATTTTTATTTTGTTTCCTCAAACTAGTAGCCAGAACTTGTCTTACAATTGGGTGCATGCAGTTTGATGATTTGTTTTATATGTAGACTAAGTGCGTGTCTGAATTAGATTCATGTTCCGTCCATATAGAAGCAAGTAAATGTAACTTCTGCATCATTTTGACGTGGTTTTGCTGCTTGAACGTGGATCCAAGACGTGTTTCCAACCACGCTCATTAGCAAGTATACCTTGATATGACCTTAAGTTTAATTGCTTTGGGCTGAAAAAAACTTATCTTCATTGGTTTGTGTTTATGTAGATTTTTGTATGCAAGACTAGAGCATATAATCGTGTGATCAAGCTATTTTGTCTCTCTTATGTATCGATATGTTTCATTTGGGGTAAAATGCTTTTCCTAAGCACCTTATGTTTAATTTGGTTTTTGAAACAATGCAGAAAGAAGTAATGGAAGAAGGTTTAAGG

>Glyma13g18530.5   sequence type=transcript   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCAATTGAACACCGTGTGTTCAGATACGTGAAAAGATTTTAGTGTTGATTCCATGTTGAAGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGATTTGTCTATTTTTATTTTGTTTCCTCAAACTAGTAGCCAGAACTTGTCTTACAATTGGGTGCATGCAGTTTGATGATTTGTTTTATATGTAGACTAAGTGCGTGTCTGAATTAGATTCATGTTCCGTCCATATAGAAGCAAGTAAATGTAACTTCTGCATCATTTTGACGTGGTTTTGCTGCTTGAACGTGGATCCAAGACGTGTTTCCAACCACGCTCATTAGCAAGTATACCTTGATATGACCTTAAGTTTAATTGCTTTGGGCTGAAAAAAACTTATCTTCATTGGTTTGTGTTTATGTAGATTTTTGTATGCAAGACTAGAGCATATAATCGTGTGATCAAGCTATTTTGTCTCTCTTATGTATCGATATGTTTCATTTGGGGTAAAATGCTTTTCCTAAGCACCTTATGTTTAATTTGGTTTTTGAAACAATGCAGAAAGAAGTAATGGAAGAAGGTTTAAGG

Coding sequences of Glyma13g18530

Limit To All Plant Sequences

>Glyma13g18530.1   sequence type=CDS   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA

>Glyma13g18530.2   sequence type=CDS   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA

>Glyma13g18530.4   sequence type=CDS   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTATTTTCATTTGTGTAGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA

>Glyma13g18530.5   sequence type=CDS   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAAATATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAGGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA

Predicted protein sequences of Glyma13g18530

Limit To All Plant Sequences

>Glyma13g18530.1   sequence type=predicted peptide   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIMAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE*

>Glyma13g18530.2   sequence type=predicted peptide   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE*

>Glyma13g18530.4   sequence type=predicted peptide   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYFHLCRIMAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE*

>Glyma13g18530.5   sequence type=predicted peptide   gene model=Glyma13g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE*

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