SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54670 | AT | Annotation by Michelle Graham. TAIR10: Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1239 | SoyBase | E_val: 0 | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0008278 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cohesin complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0018 | KOG | Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) | JGI | ISS | |
| PTHR18937 | Panther | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | JGI | ISS | |
| PTHR18937:SF12 | Panther | DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE | JGI | ISS | |
| PF02463 | PFAM | RecF/RecN/SMC N terminal domain | JGI | ISS | |
| PF06470 | PFAM | SMC proteins Flexible Hinge Domain | JGI | ISS | |
| UniRef100_I1LYK3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Structural maintenance of chromosomes protein n=1 Tax=Glycine max RepID=I1LYK3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYK3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosomes protein n=1 Tax=Glycine max RepID=I1LYK3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g18470 not represented in the dataset |
Glyma13g18470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g04300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g123700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18470.1 sequence type=CDS gene model=Glyma13g18470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGTCGCTACTCTCCCCGGGCAAAATCCACTGCCTCGAGGTGGAGAATTTCAAGTCCTACAAGGGCTTCCAAGTGATCGGTCCCTTCTACGACTTCACCGCCATCCTTGGCCCCAACGGCGCCGGCAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGTGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGAGCAGAAAGGCCGCAGAGCTTTCGTCCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAAGTTCACTCGCACCATCACCAGCGCCGGCGCCAGCGAGTACCGCATCGACGAATCCCTTGTCAATTGGGACACCTACAACAACAGACTTAAGTCCCTCGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCTATTGCGTCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAACAGATATCCGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAGGAGGAAAAAGGTGCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAAAAGAAGACTGTGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCTGTCTGCAACAAGAACTGAAATCTATGAAGGGAGAACATTTCTTGTGGAAGTTGTTTAATATACACAACGATTATGCTGAAACAATTAAGGATCTTGAAGATGAGGAAAAAAGTCGTGAAGGTGTTGTTAAAGAACTAGAATACTTCGAAAGTGAAGCTAGTAAAAAGAAAAAAGAACAGGCCAAATATCTGAAAGAGATTGCACTACGTGAAAAGAGAATTGCTGAGAAAAGCAACAAGCTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCACTTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAAAGGTTGAACGAACGAAGCATGATGCTGATATAGCATTACTACAGAATGACATCCAGGATCTTACAGCCAAAATGGCAGACCTTCAGGAAAAGGGACGAGATGTTGATGACGAGCTTGATTTGCAAGGCAATGACTTGGAAGAATATTTTCGCATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATAGTGAAGCTCAAAAGAACTTAGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGAGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAAAGTTGGCCTTGAAAACTTGAAAAAAGAACTACGCGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAGAATGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAAAAGAAGTATAACCTAGCTGTTACCGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGATAATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGATTTTTGACGTGATTCAATATCCTTTTTTCTCCAGTGGCTACTTTGAAGAATTTGGTTCTTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTCTGTTGACAAAATCCGGCACAATGACTGGGGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAATTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGATGTACGTAAGCTTGAGAGGAGGATAAATGAAATTACTGATAGGATATACAGGGACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGATATGACTTCACGAATTCAAGAATTGGAAGCTTCTCTTGGCACTTTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCAAAGTTAGCAGCTGAGAATGCTACAGAAGAGATTAATCAGCTTAAGGAGGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAAAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAGATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTCCCAGTCATACTGGATCCTATGGATACTGATATCTCAGTTCCAGGTCCATCTTTTGATTTTCATCAACTAAATAGGGCACTGAAAGATAGGAGACACTCAGATAGGGATAAAATTGAGGTAGAGTTTAAGCAAAAAATGGATGCCTTGATATCTGAAATTGAAAGAACTGCACCAAATTTGAAGGCATTAGACCAATATGAAGCTCTGCTAGAAAAAGAGAGAGTTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCACTTGTTCATGGATGCTTTCACCCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACGCATCCACTGGGTGGAACAGCATACCTAAACTTGGAAAATGATGATGATCCCTTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGTTATAAGCCTTCACCATTCTTTATATTGGACGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCAAGGACTAGTCAGGATGCTGATGGTGGAAATGGTTTTCAGAGTATAGTGATATCACTGAAAGACACCTTTTATGACAAAGCCGAAGCATTAGTTGGGGTTTACAGAGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATTTGACTAAATACCGAGAGTTCTAA
>Glyma13g18470.1 sequence type=predicted peptide gene model=Glyma13g18470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAILGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESLVNWDTYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLCLQQELKSMKGEHFLWKLFNIHNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKSNKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADIALLQNDIQDLTAKMADLQEKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLIFDVIQYPFFSSGYFEEFGSCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKKTIKERIECISPELQKLNDAVNKSNADVRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMTSRIQELEASLGTLEKDLKRVQDREAAAKLAAENATEEINQLKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQISLPVILDPMDTDISVPGPSFDFHQLNRALKDRRHSDRDKIEVEFKQKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEREKTQRFNEVKQRRYHLFMDAFTHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYREF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
