SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G30690 | AT | Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540 | SoyBase | E_val: 3.00E-104 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG1471 | KOG | Phosphatidylinositol transfer protein SEC14 and related proteins | JGI | ISS | |
| PTHR23324 | Panther | SEC14 RELATED PROTEIN | JGI | ISS | |
| PTHR23324:SF4 | Panther | SEC14 CYTOSOLIC FACTOR-RELATED | JGI | ISS | |
| PF00650 | PFAM | CRAL/TRIO domain | JGI | ISS | |
| PF03765 | PFAM | CRAL/TRIO, N-terminus | JGI | ISS | |
| UniRef100_B9SAY7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Patellin-4, putative n=1 Tax=Ricinus communis RepID=B9SAY7_RICCO | SoyBase | E_val: 1.00E-115 | ISS |
| UniRef100_UPI000233CA68 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CA68 related cluster n=1 Tax=unknown RepID=UPI000233CA68 | SoyBase | E_val: 0 | ISS |
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Glyma13g18460 not represented in the dataset |
Glyma13g18460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g04290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g123600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18460.1 sequence type=CDS gene model=Glyma13g18460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGACGCCAATGAATGTTGTTGCAATGATGAATATGGGGAAATCGTTGTTGGGGTACCCCTGGTTATCAATTTCTTTGATAAGAACAACAACAATGATGAGAAGAGTCTCAAGGTCCAAGAGAAGAAGAACCAAGAAGATCATGATTGTGATCAAGAAGATGATGACGATGATCTTGATGCCACAGCTTTGGGAGACGCGGGGGCGCCTAGTCCTGCTGAGATTAAACTCAAGATGAAGAAGTCATTGCTCGAGTTTCGTTGCAAGGTTGAGGATGCCATTCTTGGGAACTATTTGTTAGGAGAACAAGATCATGAGAAACTTGCACCACAAGAAATAGCAGTGGCAAGGGAACAGATTAGAGAGATTACTCTCTGGGGTGTCCCTTTGTTGCTAAGCAAGGCTCATGAGGGCACTGATGTTGTTTTGAGGAAATTCTTGAAGGCCAAGGATTTCAAGGTGAATGAGGCCTTTGACATGCTGCAAAAGACACTTGTGTGGCGCCGCGAGAACAACGTTGATGGGATCACCGATGAGGATTTGGGTTCTGAGTTCGGAAATAATGCAGGATTCTTGTGCGGTAAGGATAGGGAAGGTCGTCCTGTGTGTTACCATGCTTGTGAGATTTTCAAAGACAGGCGTGTTTACAAGAAGACATTTGGATCAGATAACACATGTGACAAGTATTTGAGGTGGAGGATTCAAATGATTGAAAAGGCTGTGAAGAAGCTTTGTTTTAGAGAAGGAGGGGTGGAATCCATACTTCAGGTTTTTGATTTGAGGAACACTCCAATGCAAGGAACCAAGGAGCTCAACTCAGTCAGCAAAAAGGCTCTAATATTGTTTCAGAACTACTACCCTGAGATCATTCACAAAAATATTATAGTATATGCTCCATTTTGGTTCTACACTTCTCAAGTGCTATTATCAGGGTTCATGAACCAGAGAAATAAAAAGAAGTTCATCTTAGCTAGGTCACAGAAGGTCACACAGACACTTCTCAAGTTTATAGCCCCAGAGCACCTTCCAACTGAATATGGTGGTCTAAGGAGGAACAATGATGAAGACTTCTCGCCTTCTGATAAGGTTTCAGAGCTTAAAATCAAAGGAAGTACGGTTTCTAAAGTTGAATTTCCGATCCAACAGCTTGGAGTGACAATAATGTGGGATGTAACTGTGGTGGGATGGGATGTGTCCTACAAGGAAGAGTTCATTCCAGATGATGAAGGCTCATACACTGTACTACTGCAAAACCAAAGTGTAGATGGTAGCAGCACTAGAAACTCCTTTTACATCAGTGAACCTGGGAAGATAGTGATAACAGTTGAAAATAGAACCTACAAGAAGAAGAAAATGTTCTATAGATCTACAGCTAGAACCACTGTTCCCATGTTCTTCTTGTTACAGTAG
>Glyma13g18460.1 sequence type=predicted peptide gene model=Glyma13g18460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDANECCCNDEYGEIVVGVPLVINFFDKNNNNDEKSLKVQEKKNQEDHDCDQEDDDDDLDATALGDAGAPSPAEIKLKMKKSLLEFRCKVEDAILGNYLLGEQDHEKLAPQEIAVAREQIREITLWGVPLLLSKAHEGTDVVLRKFLKAKDFKVNEAFDMLQKTLVWRRENNVDGITDEDLGSEFGNNAGFLCGKDREGRPVCYHACEIFKDRRVYKKTFGSDNTCDKYLRWRIQMIEKAVKKLCFREGGVESILQVFDLRNTPMQGTKELNSVSKKALILFQNYYPEIIHKNIIVYAPFWFYTSQVLLSGFMNQRNKKKFILARSQKVTQTLLKFIAPEHLPTEYGGLRRNNDEDFSPSDKVSELKIKGSTVSKVEFPIQQLGVTIMWDVTVVGWDVSYKEEFIPDDEGSYTVLLQNQSVDGSSTRNSFYISEPGKIVITVENRTYKKKKMFYRSTARTTVPMFFLLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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