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Report for Sequence Feature Glyma13g18400

Feature Type:gene_model
Chromosome:Gm13
Start:22067735
stop:22068578
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g18400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23230AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139 SoyBaseE_val: 3.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9GS21UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GS21_POPTR SoyBaseE_val: 4.00E-38ISS
UniRef100_C6T1T9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1T9_SOYBN SoyBaseE_val: 1.00E-110ISS

Expression Patterns of Glyma13g18400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18400
ParalogEvidenceComments
Glyma10g04190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g123000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g18400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g18400
>Glyma13g18400.1   sequence type=CDS   gene model=Glyma13g18400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGGAAGATCATCTGCTTCAAATGGGAATTGTGAGGTTCGGTATAGAGGGATTAGAAGAAGGCCATGGGGCAAGTTTGCAGCAGAGATTCGTGACCCTACGAGAAAAGGGACAAGGATATGGCTTGGAACATTTGACACTGCGGAACAAGCTGCTCGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCAATTCTCAACTTCCCAAATGAGTACCAATCTCATAATCCAAACTCTTCTTTGCCTATGCCTCTAATTGTGCCTCCTCCTTCTTATTCTTCTTCTTTCACTTCTAATTATTCTGGTGATGATAATAACCACCTTGTGAGACCTGGAGAAATAATGCAAGGTGGTGATCTTGATGACACTTTTGAGTTGGAGTACTTGGATAATAAGTTGCTCGAGGAACTCCTTCAGATGCAAGATAACAGACACTTCTACAAGTGA
Predicted protein sequences of Glyma13g18400
>Glyma13g18400.1   sequence type=predicted peptide   gene model=Glyma13g18400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGRSSASNGNCEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSHNPNSSLPMPLIVPPPSYSSSFTSNYSGDDNNHLVRPGEIMQGGDLDDTFELEYLDNKLLEELLQMQDNRHFYK*






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