Glyma13g18250 - SoyBase

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Report for Sequence Feature Glyma13g18250

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21926240
stop:	21929386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68930	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein \| chr1:25918314-25920545 FORWARD LENGTH=743	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF141	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LG72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LG72_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LYI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LYI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g18250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g18250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g121800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g18250

Limit To All Plant Sequences

>Glyma13g18250.1   sequence type=CDS   gene model=Glyma13g18250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTTGCACGTATCAAAGCAATTCAATTCCATGTCACTGTCTAACCACTACTGTGAGTTGCTCAAACATTGCCGCGACACAAAGAAGATTCACTGCCACATAATCAAGGCCTTTCGAAACCCCGAAATCTTCCTGCTAAACAACTTAGTCAGTGCCTATGCCAAGTTTGACAGAATCACTTATGCCCGCAGGGTGTTCGACCAAATGCCTCAAAGGAATCTCTACTCTTGGAACACCCTTCTTTCCTCCTATTCCAAACTTGCTTGTCTTCCTGAGATGGAACGTGTGTTTCATGCAATGCCAACCCGAGATATGGTATCATGGAATTCCCTTATTTCTGCCTATGCTGGTCGTGGTTTCCTTCTTCAGTCGGTAAAGGCTTATAATTTGATGTTGTACAATGGGCCATTCAATCTGAATCGGATTGCGTTATCCACTATGCTTATACTTGCTTCCAAACAGGGTTGTGTTCATTTGGGTCTGCAGGTTCATGGGCATGTGGTGAAATTTGGTTTCCAGTCATATGTTTTTGTTGGGAGTCCTTTGGTGGATATGTACTCTAAAACTGGGCTGGTATTTTGTGCAAGGCAGGCTTTTGATGAGATGCCTGAGAAGAATGTGGTTATGTATAATACATTGATTGCAGGGCTTATGCGATGCAGTAGGATTGAAGATTCAAGGCAATTGTTTTATGATATGCAGGAAAAGGATTCTATTTCCTGGACAGCGATGATTGCAGGATTTACTCAGAATGGTTTGGACCGAGAAGCAATTGATTTATTCAGAGAGATGAGATTAGAAAATCTAGAGATGGATCAGTACACATTTGGAAGCGTGTTAACTGCTTGTGGTGGTGTTATGGCTTTGCAAGAAGGCAAGCAAGTTCATGCTTATATAATTAGGACAGATTATCAGGATAATATATTTGTTGGTAGCGCTCTTGTTGACATGTATTGTAAGTGTAAGAGTATAAAATCAGCAGAAACAGTTTTTAGGAAGATGAATTGCAAGAATGTTGTATCTTGGACTGCGATGTTAGTGGGTTATGGACAGAATGGTTACAGTGAAGAAGCTGTTAAAATCTTTTGTGATATGCAAAACAATGGGATTGAGCCTGATGATTTCACCCTTGGGAGTGTAATTAGCTCATGTGCAAACCTTGCAAGCCTAGAAGAGGGGGCTCAGTTTCATTGTAGAGCTCTGGTTTCTGGCTTAATTTCTTTTATTACTGTTTCCAATGCTCTAGTTACATTATATGGTAAGTGTGGAAGCATTGAAGACTCCCATAGGCTTTTTAGTGAAATGAGCTACGTGGATGAAGTCTCATGGACTGCACTTGTTTCTGGATATGCACAGTTTGGTAAAGCCAATGAAACATTAAGGTTGTTTGAAAGCATGTTAGCTCATGGTTTCAAACCCGACAAGGTTACTTTTATCGGGGTTCTTTCAGCTTGCAGTAGAGCCGGACTAGTACAGAAAGGAAATCAGATATTTGAATCAATGATTAAGGAACATAGGATTATACCAATTGAAGATCATTACACATGCATGATTGATCTCTTCAGTCGAGCTGGGAGGTTAGAAGAGGCAAGGAAATTTATAAATAAGATGCCTTTCAGCCCTGATGCAATTGGTTGGGCATCCTTATTAAGTTCATGTAGGTTCCATCGAAACATGGAAATTGGCAAGTGGGCAGCTGAGTCTCTTTTAAAATTAGAACCACATAACACTGCTAGTTACATCTTACTTTCGAGCATCTATGCTGCTAAAGGAAAATGGGAAGAAGTTGCCAATTTAAGAAAAGGGATGAGAGATAAGGGCCTGAGAAAGGAACCAGGATGTAGCTGGATCAAATATAAGAACCAAGTGCACATTTTCTCTGCTGATGATCAGTCAAACCCATTTTCAGATCAGATATATTCTGAACTTGAAAAATTGAACTATAAAATGGTACAAGAGGGATATGTGCCTGACATGAATTCTGTTTTGCATGATGTTGACGATTCAGAGAAAATAAAGATGCTTAATCACCATAGTGAAAAGCTTGCAATTGCTTTTGGGTTGATATTTATTCCTCCTGGTTTGCCCATACGAGTAGTTAAAAATTTAAGGGTTTGTGGGGATTGCCACAATGCAACTAAGTATATATCTAAGATCACCCAGAGGGAGATTCTTGTAAGAGATGCTGCCCGATTCCATTTGTTTAAAGATGGAAGGTGTTCGTGTGGAGACTTTTGGTGA

Predicted protein sequences of Glyma13g18250

Limit To All Plant Sequences

>Glyma13g18250.1   sequence type=predicted peptide   gene model=Glyma13g18250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCLHVSKQFNSMSLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW*

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