Glyma13g18170 - SoyBase

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Report for Sequence Feature Glyma13g18170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21852876
stop:	21856402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58170	AT	Annotation by Michelle Graham. TAIR10: BET1P/SFT1P-like protein 14A \| chr3:21542632-21543775 REVERSE LENGTH=122	SoyBase	E_val: 7.00E-66	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG3385	KOG	V-SNARE	JGI		ISS
PTHR12791	Panther	GOLGI SNARE BET1-RELATED	JGI		ISS
PTHR12791:SF5	Panther	BET1-LIKE SNARE 1	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_D5FGC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like snare 1-1 n=1 Tax=Malus x domestica RepID=D5FGC6_MALDO	SoyBase	E_val: 4.00E-69	ISS
UniRef100_I1LYH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYH7_SOYBN	SoyBase	E_val: 6.00E-84	ISS

Expression Patterns of Glyma13g18170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18170

Paralog	Evidence	Comments
Glyma10g04020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g121100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g18170

Limit To All Plant Sequences

>Glyma13g18170.2   sequence type=transcript   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACACATACACGGTTACTACTAATAGCGTGCGTGGATAACATGAGTCTAAGGATTGGCCCTGCACATTACTACCTTTTAAAGTCTTTTAACTCAAAGGTAATTACAGTGTTACACTCGTGAAGCTCGTATCGTATATAAACCTCCGATTCACTCTCTTCTCCTTCTACCTCTCTTTTTCTGCTTTTCACTGAGTTTTTTTTTTTTTATTATTTATTTCAACAGAGGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTCACGCACTTGTCAGCTTTATGTTAGATCGAAAAGGAGGCTACTCGCACTATTCCTGTAATTAGCGTTACTTGTAAGATTTTCCTTATGTTTGTATAAAGACTTTGCTGTTTCGTTTAATCCAACGAGTAATGTCCATATCCAGTTTGTACAAGAAAATAAAAACCAGTTTGTGCATATTTTCACTTTGGTTTAGATTATGTATATGCTTCATCTATTCTCTAGAAGATTCGTACTCTATTTATCAAGAAAAATATTTTGATCATTGTTGAGGAAAGAGGATCTAGTAATGCTATCGTTCTAATCCTGAATTTATTTGGTTATGGTTAGTCTCATCCTAATAGACGTGTAGACCACTTCGAATGAATTAAAAC

>Glyma13g18170.3   sequence type=transcript   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACACATACACGGTTACTACTAATAGCGTGCGTGGATAACATGAGTCTAAGGATTGGCCCTGCACATTACTACCTTTTAAAGTCTTTTAACTCAAAGGTAATTACAGTGTTACACTCGTGAAGCTCGTATCGTATATAAACCTCCGATTCACTCTCTTCTCCTTCTACCTCTCTTTTTCTGCTTTTCACTGAGTTTTTTTTTTTTTATTATTTATTTCAACAGAGGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAGAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATGTGGACTTTAAATCCTGAATGCACTAATATATACATTTGTTGTCTTCTCCTTTCCTTTTTGCTCCGGGAGAATGTCAATAGATGTGGCAGGAGTAGTGTTGTCTTCCCTCTCACGATCAAGTTTTTATTTTTCCATGTCTTTCTTTAATGATCTTGTGTCATTTTTCAGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTCACGCACTTGTCAGCTTTATGTTAGATCGAAAAGGAGGCTACTCGCACTATTCCTGTAATTAGCGTTACTTGTAAGATTTTCCTTATGTTTGTATAAAGACTTTGCTGTTTCGTTTAATCCAACGAGTAATGTCCATATCCAGTTTGTACAAGAAAATAAAAACCAGTTTGTGCATATTTTCACTTTGGTTTAGATTATGTATATGCTTCATCTATTCTCTAGAAGATTCGTACTCTATTTATCAAGAAAAATATTTTGATCATTGTTGAGGAAAGAGGATCTAGTAATGCTATCGTTCTAATCCTGAATTTATTTGGTTATGGTTAGTCTCATCCTAATAGACGTGTAGACCACTTCGAATGAATTAAAAC

Coding sequences of Glyma13g18170

Limit To All Plant Sequences

>Glyma13g18170.1   sequence type=CDS   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGGAGAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAA

>Glyma13g18170.2   sequence type=CDS   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGGAGAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAA

>Glyma13g18170.3   sequence type=CDS   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGGAGAGATGGTCGTAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTACTCCTCAACTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATGTGGACTTTAA

Predicted protein sequences of Glyma13g18170

Limit To All Plant Sequences

>Glyma13g18170.1   sequence type=predicted peptide   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDGRNNRVALFDGIEEGGIRASSLYSSTSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLIIYYLTR*

>Glyma13g18170.2   sequence type=predicted peptide   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDGRNNRVALFDGIEEGGIRASSLYSSTSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLIIYYLTR*

>Glyma13g18170.3   sequence type=predicted peptide   gene model=Glyma13g18170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDGRNNRVALFDGIEEGGIRASSLYSSTSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVCGL*

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