SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54560 | AT | Annotation by Michelle Graham. TAIR10: Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529 | SoyBase | E_val: 0 | ISS |
| GO:0010584 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen exine formation | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016459 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: myosin complex | SoyBase | N/A | ISS |
| GO:0003774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0160 | KOG | Myosin class V heavy chain | JGI | ISS | |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF36 | Panther | MYOSIN I, HIGH MOLECULAR WEIGHT FORM | JGI | ISS | |
| PF00063 | PFAM | Myosin head (motor domain) | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| PF02736 | PFAM | Myosin N-terminal SH3-like domain | JGI | ISS | |
| UniRef100_B9S7I4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9S7I4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYH4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LYH4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g18140 not represented in the dataset |
Glyma13g18140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03963 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g120800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18140.2 sequence type=CDS gene model=Glyma13g18140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATACAGGGGATTCCAGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAACTAGTTTGGATTGATGGACAGGTACTGAATATTAATGGTGAAGAAGCAGAAATTCAAACTAGTAATGAGAAGAAGGTTGTTTCCCGTTTGTCAAAATTATATCCCAAGGATATGGATGCGCCTACCGATGGGGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACCAGATACATGATGAATGAAATATATACTTATACTGGGAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTGTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACGATTGGAGACTTGGACCCACATGTTTTTGCTATTGCTGAATCAGCATATAGGGCAATGATTAATGAGGAAAAAAGCAACTCAATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTGGGTGGTAACACTGCATCTGAAGGAAGAACTGTTGAAAAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCAAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTAATAAGTACGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCATTGTTTCTACCTTCTTTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTATGAATTAATTGGTGTAAATTCTGCTCAAGAGTATCTGAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAACTGATTCATCAGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATTCTTTGGAAGGTGCACTCCGTGAGCGTGTGATGATTACTCCAGAAGAGATCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTATATTCTCGATTATTTGACTGGTTAGTCCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAATGAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACGAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAGGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCACGAAACATTTTCCCAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGACACGCTCAGATTTCACTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAATCTGAGCAGTTTTTAGACAAGAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCCAAATGTTCATTTGTATCTGGCCTTTTCCCTCCAATTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAGTTGATGGATGCACTCAGTCTGACAGAGCCACACTATATTAGATGTGTAAAGCCAAATAGTCTATTAAAACCTTGCATATTTGAAAATATGAACGTTATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACTGGACCTTTCATGATTTCTTAACTCGATTAGGCATTCTTGCTCCGGAGGTTCTTCGGGGGAACTTCGAAGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGGCAGGTTATCAGATAGGGAAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCAGAGAGCATTCCTGCTTAGTAGTTCTGCAACAGTTATCCAAAAGCATACTAAAACTCATTTTAGTCGGAAAAAATATATTGCATTGCAAAAGTCCTCTGTTTTTTTGCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATCGTATTATCACATGAAGAGGGAAGCAGGTGCAGTCAGAATTCAAAAGTATATGCGTGGAACACTTGCCAGGAAATGGTACACCAAAATAAAGATCTCTGCCATTGTCTTGCAGACAGGTTTTCGAGCAGTGGCTGCTTGTAATAAATTTAGATATAGAAAGCAAATTAGTGCATCAACTACTATTCAGTCCTATTGGCGCCGACATAAAGCTCTCTATGACTATCAGAACCTTAGGAAAGCATCAATCAGTTCACAAAGCATCAATCACTCCAATGATAAACATGAACAGAAGGTTTTGGGGACACCTGTGCTAAATGAAAGTCCTTCTATGGAAGAATCTTCAAATCCTGTCCAAGAAGAATCATCAAGTCCTTTCCAAGATGATGAAAACATTGAAGCTATCAGGGATTCCTCTAGTCCTCTCAAAGACACTGAAAAGATTGAGGTTCTTACTGTAGAAATAAAAAACTTGAAGGTCATGTTGCAGGAAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCCAGCGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCGTTGAACAGTGTGTATCAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAG
>Glyma13g18140.2 sequence type=predicted peptide gene model=Glyma13g18140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIQGIPENIVVGSHVWVGDPELVWIDGQVLNINGEEAEIQTSNEKKVVSRLSKLYPKDMDAPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGATIGDLDPHVFAIAESAYRAMINEEKSNSILVSGESGAGKTETTKMLMQYLAYLGGNTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELIGVNSAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEESKFHLQTTAELLMCDPNSLEGALRERVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQMNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFPPISEETAKSAKFSSIGSRFKLQLQQLMDALSLTEPHYIRCVKPNSLLKPCIFENMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFLTRLGILAPEVLRGNFEEKDSCKKILEKIGLAGYQIGKTQIFLRAGQMAELDAQRAFLLSSSATVIQKHTKTHFSRKKYIALQKSSVFLQSICRGELARRSYYHMKREAGAVRIQKYMRGTLARKWYTKIKISAIVLQTGFRAVAACNKFRYRKQISASTTIQSYWRRHKALYDYQNLRKASISSQSINHSNDKHEQKVLGTPVLNESPSMEESSNPVQEESSSPFQDDENIEAIRDSSSPLKDTEKIEVLTVEIKNLKVMLQEEKQRGDEYERKYVEAQGSSEELRKKLAETEKRVYQLQDSLNSVYQDDIFHVKSSCRAEDDLEYFIKIEFNFSTYC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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