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Report for Sequence Feature Glyma13g18131

Feature Type:gene_model
Chromosome:Gm13
Start:21776936
stop:21779206
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16430AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:9267599-9269002 FORWARD LENGTH=467 SoyBaseE_val: 4.00E-154ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11514Panther MYC JGI ISS
PTHR11514:SF7Panther B-MYC PROTO-ONCOGENE JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_D9ZIN7UniRef Annotation by Michelle Graham. Most informative UniRef hit: BHLH domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIN7_MALDO SoyBaseE_val: 0ISS
UniRef100_UPI000233C067UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C067 related cluster n=1 Tax=unknown RepID=UPI000233C067 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g18131 not represented in the dataset

Glyma13g18131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g03950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g120700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g18131.1   sequence type=CDS   gene model=Glyma13g18131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTGAGAAGTTTTGTGTGAACGAGGAAGACAAGGGTGTGTTGGAGTCTGTGCTGGGTGCAGAGGCTGTTGCGTTCTTTATTTCCGCACTTTCCAATAATGTCTTTTCCGGTGTGGTTGCGCCATCGGCCAGTACTGACCCGGGTCTCCGACAGCGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGTCTTGAAATCTGGTGGTTCTGCCTTGGTTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGAGAGGAATGGAGTTGGGAAGGAGGATGAGCAGGAGGTGAGAAAGAATGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCGAGATTGGACAGGGTTTCGGATTTGCTCATGTTTTACTTATCCTCAATGTGTTATATATTTGGTTTTGATTCGCCATGTGGCCCTGGCAGTTCGTTCAAGTCTGGTAAATTGATTTGGGCTTCCGATGCTGCTGGTTGTTTAAACCAATTAGAATCTAGATCGTTTATGGGGAAATTGGCTGGTCTTCAAACTGTTGTGTTTGTTCCTCTGAAGTCCGGGGTGGTGGAGCTTGGTTCGCTCGAAATGGTGCCTGAAGAGCACGGTGTTGTGGAGATGGTCAGGACAGCATTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTTTCCGAAGATTTTTGGGCATGAGTTAAGCCTAGGGGACACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCGGACTCCTATGAGGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGTCAGTAATGAAGGTAAAATGTTCCCTCAACTGAATCAAATGATGGCTGGGAATTTTAATGCTCAAGGAAGCGGGGTTCCTTGTCTAGATCTCGGTAATGAAGACTCATCCTCCATTCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCGGCAAATGGGAGAGAGGAACCGCTGAATCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAACCAAAGGTTTTATGCCTTGAGAGCTGTTGTCCCTAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATCCACAATCAGGACCAAAAATTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGATGAGACAGTTGTGACAGTGAGATGCCCCTTAGATATTCACCCTGTTTCTAATGTTGTTAAAACGTTCAAGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCGACTACAGATGATAAAATTATTCACACATTCTCCATAAGAACTGAGGGAGGGGAGACTGCTGCTATACAGTTGAAAGAAAAGCTGGAAGCATCCCTATCCAAAAATCGATAG

>Glyma13g18131.1   sequence type=predicted peptide   gene model=Glyma13g18131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSASTDPGLRQRLCQLVEGSKWNYAVFWQVAVLKSGGSALVWGDGHCSDPKGERNGVGKEDEQEVRKNVLQKLDACFGGSVSKEANYARLDRVSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWASDAAGCLNQLESRSFMGKLAGLQTVVFVPLKSGVVELGSLEMVPEEHGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGVSNEGKMFPQLNQMMAGNFNAQGSGVPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMIHNQDQKLSLPDMDFQEREDETVVTVRCPLDIHPVSNVVKTFKEHQIVAQDSSVSTTDDKIIHTFSIRTEGGETAAIQLKEKLEASLSKNR*







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