SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26770 | AT | Annotation by Michelle Graham. TAIR10: plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496 | SoyBase | E_val: 0 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0032880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein localization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| PTHR26369 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26369:SF18 | Panther | JGI | ISS | ||
| UniRef100_B9SB74 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SB74_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C064 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C064 related cluster n=1 Tax=unknown RepID=UPI000233C064 | SoyBase | E_val: 0 | ISS |
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Glyma13g18061 not represented in the dataset |
Glyma13g18061 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g120100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18061.1 sequence type=CDS gene model=Glyma13g18061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAAGGATGACCCATGATTTTGGGGATACTATGCAGAAAGATGCAGTGCCGGTGGTGTCGGCCGATGTAATATTTGCTTCTCTTCGGTTTCCTAATTACAAAATCGGAGTTAATAATCAGATCATGGAGACAAAGGATGATCCAAAAGTGCTATCTATGAAGGAGGTTGTTGCGCGAGAGACTGCACAGCTGTTGGACCAGCAGAAACGTATGTCGGTTCGCGATCTTGCCAGCAAATTTGAGAAGGGTTTGGCAGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTCAGAGAAGCAGCTTCTCTGGAAAAGCATGTTCTTTTGAAGAAGCTTCGAGATGCACTGCAATCCTTAAAAGGGAGAGTGGCAGGAAGAAACAAGGATGATGTAGCGGAAGCTATTGCTATGGTTGAAGCTCTAGCAGTTCAATTGACTCAAAGGGAAGGGGAATTAATACAAGAGAAGTCTGAGGTGAAGAAGCTAACAAATTTTCTTAAGCAGGCTTCTGAAGATGCTAAGAAACTTGTGAATGAGGAAAGAGCTTTTGCTCGTTTTGAAATAGAAAATGCCAGAGCAGCAGTTCAGAGAGTGGAGGAGGCACTTCAGGAGCATGAGAGAATGTCTCAAGCTTCAGGAAAACAGGACCTGGAACAGTTAATGAAGGAAGTTCAAGAGGCTCGGAGAATCAAAATGCTGCATCAGCCAAGCAAGGTTATGGATATGGAACATGAGCTTCGTGCATTGAGGGCTCAACTTGCTGAGAAGTCTAGACTATATCTTCGTCTACAAAAGGAGTTAGCAAGGACAAAGAAAGGAGAGGAAAATGCTCCCCATTTATATGAATTAGAAGGAACTGAAACGTTAGGCTCATATTTGCAAATTCAACCTTGCTCTGATAATGGCCCTGAACTTTCAGAATGTTCAATTCAGTGGTATCGTGTATCATCTGAAGGTGCCAAAAAGGAACTTATTTCAGGAGCTACCAAGTCAGTTTATGCCCCCGAACCTTTTGATGTTGGACGTGTATTGCAAGTTGATATTATTTCAGAGGGCCAGCAGATCACATTGTCAACCACTGGTCCAATTGATCCAGCTGCTGGTTTGGGAACCTATGTAGAGGCACTTGTGCGAAAACATGACACTGAATTCAATGTGGTTGTAACTCAGACTGTCTCAGACCATCCAAATGAATCTATTCATGTACTTCATGTTGGAAAGATGAGGATGAAGCTCTGTAAAGGAAATACAACAATTGCCAAAGAATACTATTCTAGTTCAATGCAGCTTTGTGGAGTTCGAGGAGGTGGGAATGCTGCAGCACAGGCAGTCTTTTGGCAACCGAAGCAAGGTCTTTCTTTTGTATTAGCTTTTGAGTCAGAGCGAGAAAGGAATGCAGCTATCATGCTTGCAAGGAGATTTGCATTTGACTGTAATATTATTCTTGCTGGACCTGATCACAAAGCTCCATTAGAAACATAA
>Glyma13g18061.1 sequence type=predicted peptide gene model=Glyma13g18061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTRMTHDFGDTMQKDAVPVVSADVIFASLRFPNYKIGVNNQIMETKDDPKVLSMKEVVARETAQLLDQQKRMSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALQSLKGRVAGRNKDDVAEAIAMVEALAVQLTQREGELIQEKSEVKKLTNFLKQASEDAKKLVNEERAFARFEIENARAAVQRVEEALQEHERMSQASGKQDLEQLMKEVQEARRIKMLHQPSKVMDMEHELRALRAQLAEKSRLYLRLQKELARTKKGEENAPHLYELEGTETLGSYLQIQPCSDNGPELSECSIQWYRVSSEGAKKELISGATKSVYAPEPFDVGRVLQVDIISEGQQITLSTTGPIDPAAGLGTYVEALVRKHDTEFNVVVTQTVSDHPNESIHVLHVGKMRMKLCKGNTTIAKEYYSSSMQLCGVRGGGNAAAQAVFWQPKQGLSFVLAFESERERNAAIMLARRFAFDCNIILAGPDHKAPLET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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