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Report for Sequence Feature Glyma13g18021
Feature Type: gene_model
Chromosome: Gm13
Start: 21681171
stop: 21685035
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g18021
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06483 AT
Annotation by Michelle Graham. TAIR10: pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366
SoyBase E_val: 1.00E-145 ISS
GO:0030003 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis
SoyBase N/A ISS
GO:0046777 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation
SoyBase N/A ISS
GO:0070838 GO-bp
Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0004740 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0009927 GO-mf
Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity
SoyBase N/A ISS
GO:0042803 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity
SoyBase N/A ISS
PTHR11947 Panther
PYRUVATE DEHYDROGENASE KINASE
JGI ISS
PF02518 PFAM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
JGI ISS
PF10436 PFAM
Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
JGI ISS
UniRef100_A0MP01 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial pyruvate dehydrogenase E1alpha-kinase 3 n=1 Tax=Glycine max RepID=A0MP01_SOYBN
SoyBase E_val: 3.00E-179 ISS
UniRef100_UPI000233C062 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C062 related cluster n=1 Tax=unknown RepID=UPI000233C062
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g18021
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g18021
Paralog Evidence Comments
Glyma17g04470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g18021 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g119800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g18021
Transcripts of Glyma13g18021
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g18021.2 sequence type=transcript gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCATTTTTGTGTTGGAGGAAAATGGCATCTAGTTTGGGACCTACACATAAGATAAAATTATTTGTTTGTCGTGTTCGTGATGTTCTTCCTACCTTACCAGGTTCCCTTTATCTTCAAAGGGACTTCAGTGTCCAATTGTGTTCAGAGTCAGAAGCAACCTCATTACTGGTGGCAAATCACCTTGGTCGTAGAGTTGAGGCTTCATAATGTTATATTAGAAATAGATTGCAAACATCATATCTATGATAGTTTTCATTCGGGTTTAATTGTAAGGATAAACTTGCTTTGATAAACAACTCATCATTGAGTTTGAGTTTGGTTCTAATCTATAGTATGTTTGAGTATCCTGTAGGGTAGTCTTCAAATTGCGTTTTATGAATGCAATAAAATGTGCAGTTAAAATTGAAGCCCTGTTTTTTCAGACCCATTTTTCTTTCCCCACCCCACTTGTCCTTTTCTGCCTCAGCGGAAAACCCACTTCCAAACTTCTGTTCCTATCTCTCTCCACACTTCTGGGGACACTGTTGTTGTCGTTTTCATCTGTGTCACTTCCTAGCTCTCGGTTTCATTTATTACATGTTGTCGATCTGTGTGTTGTTGGGTCCAGAAACAAGGCATGGAGGTTAAGATTCAGAAAACGTTGTCTATGTGCAAGAATTTGATGAAGGAGGTAAAGACATGGGGTTGTTTGAAGCAGACAGGGCTGAGTTTAAGATATATGATGGAGTTTGGTTCCAACCCCACTCCCAAGAATTTACTCATCTCTGCTCAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACACTCTCCCTCATGGCTTGTCTCACAGGCCTCCTGTCTTGAAGATCTTTTCCTGAGATGAAGAATATGAATGACGAGAAAGAATTCACTGAACTGATTAAGTCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGACCCTGATGAGATTGATGAGTTTCTTGATCGCATTTACATGTCAAGAATTGGAATCCGTATGCTCATCGGACAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATGGTGAATATGGAAGTGCTGCAGATGTTCGAATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGTTTTTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGACCATTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAAAATATTTACATATCTCTACAGTACAGCCAGAAATGCATCGTGGGATGAAAATGAACCTTCTGATCTTGGAACAACCGATAATATAAGTGTAAAAATGGCTGGAAATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGCGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGAAAGTAAATGACTTGGGTAAATATTGTGCACGGAGAAGCACCAAAACGATGCAGACGCGGGCAATAAGAACTGTTTCTGTCAATGCTATTTTGATTCTAACAATTTGGGACTTTGTTATAGACCAATATGTTTCCTGCTAGCCATGGAGAATCTAATTAAGAAAAGCAAAAAGAATTTATCTTATACAAAAGTGTAACTTTTAAGGATATTTTCATGTTAACTACTTTGGGGGTGTAATTAAAGTTCTGTTTAAACCAAGAGAGAATAAAGATTTTTAACCAAAGAAGTTGTTCATATTAGCAATTACAATTCCTAAAAGTAGTCAAAGCTTTGGTTAAAATCTAAAATCAGATTTTGTTCAATCCTTCAGTGGTGGCAATGCCACACCAATGATGTGCATTTGTAGTGTTGAAAAAACAA
>Glyma13g18021.3 sequence type=transcript gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCATTTTTGTGTTGGAGGAAAATGGCATCTAGTTTGGGACCTACACATAAGATAAAATTATTTGTTTGTCGTGTTCGTGATGTTCTTCCTACCTTACCAGGTTCCCTTTATCTTCAAAGGGACTTCAGTGTCCAATTGTGTTCAGAGTCAGAAGCAACCTCATTACTGGTGGCAAATCACCTTGGTCGTAGAGTTGAGGCTTCATAATGTTATATTAGAAATAGATTGCAAACATCATATCTATGATAGTTTTCATTCGGGTTTAATTGTAAGGATAAACTTGCTTTGATAAACAACTCATCATTGAGTTTGAGTTTGGTTCTAATCTATAGTATGTTTGAGTATCCTGTAGGGTAGTCTTCAAATTGCGTTTTATGAATGCAATAAAATGTGCAGTTAAAATTGAAGCCCTGTTTTTTCAGACCCATTTTTCTTTCCCCACCCCACTTGTCCTTTTCTGCCTCAGCGGAAAACCCACTTCCAAACTTCTGTTCCTATCTCTCTCCACACTTCTGGGGACACTGTTGTTGTCGTTTTCATCTGTGTCACTTCCTAGCTCTCGGTTTCATTTATTACATGTTGTCGATCTGTGTGTTGTTGGGTCCAGAAACAAGGCATGGAGGTTAAGATTCAGAAAACGTTGTCTATGTGCAAGAATTTGATGAAGGAGGTAAAGACATGGGGTTGTTTGAAGCAGACAGGGCTGAGTTTAAGATATATGATGGAGTTTGGTTCCAACCCCACTCCCAAGAATTTACTCATCTCTGCTCAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACACTCTCCCTCATGGCTTGTCTCACAGGCCTCCTGTCTTGAAGATGGTTATTGATCATTAAACTTTGTGCTACTGTTTTATGTTTTTATGTTAAAGATTGGTACTTGGATTCTTTCCGTGAAATTAGATCTTTTCCTGAGATGAAGAATATGAATGACGAGAAAGAATTCACTGAACTGATTAAGTCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGACCCTGATGAGATTGATGAGTTTCTTGATCGCATTTACATGTCAAGAATTGGAATCCGTATGCTCATCGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATGGTGAATATGGAAGTGCTGCAGATGTTCGAATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGTTTTTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGACCATTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAAAATATTTACATATCTCTACAGTACAGCCAGAAATGCATCGTGGGATGAAAATGAACCTTCTGATCTTGGAACAACCGATAATATAAGTGTAAAAATGGCTGGAAATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGCGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGAAAGTAAATGACTTGGGTAAATATTGTGCACGGAGAAGCACCAAAACGATGCAGACGCGGGCAATAAGAACTGTTTCTGTCAATGCTATTTTGATTCTAACAATTTGGGACTTTGTTATAGACCAATATGTTTCCTGCTAGCCATGGAGAATCTAATTAAGAAAAGCAAAAAGAATTTATCTTATACAAAAGTGTAACTTTTAAGGATATTTTCATGTTAACTACTTTGGGGGTGTAATTAAAGTTCTGTTTAAACCAAGAGAGAATAAAGATTTTTAACCAAAGAAGTTGTTCATATTAGCAATTACAATTCCTAAAAGTAGTCAAAGCTTTGGTTAAAATCTAAAATCAGATTTTGTTCAATCCTTCAGTGGTGGCAATGCCACACCAATGATGTGCATTTGTAGTGTTGAAAAAACAA
Coding sequences of Glyma13g18021
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g18021.1 sequence type=CDS gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAATATGAATGACGAGAAAGAATTCACTGAACTGATTAAGTCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGACCCTGATGAGATTGATGAGTTTCTTGATCGCATTTACATGTCAAGAATTGGAATCCGTATGCTCATCGGACAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATGGTGAATATGGAAGTGCTGCAGATGTTCGAATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGTTTTTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGACCATTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAAAATATTTACATATCTCTACAGTACAGCCAGAAATGCATCGTGGGATGAAAATGAACCTTCTGATCTTGGAACAACCGATAATATAAGTGTAAAAATGGCTGGAAATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGCGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGA
>Glyma13g18021.2 sequence type=CDS gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAATATGAATGACGAGAAAGAATTCACTGAACTGATTAAGTCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGACCCTGATGAGATTGATGAGTTTCTTGATCGCATTTACATGTCAAGAATTGGAATCCGTATGCTCATCGGACAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATGGTGAATATGGAAGTGCTGCAGATGTTCGAATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGTTTTTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGACCATTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAAAATATTTACATATCTCTACAGTACAGCCAGAAATGCATCGTGGGATGAAAATGAACCTTCTGATCTTGGAACAACCGATAATATAAGTGTAAAAATGGCTGGAAATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGCGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGA
>Glyma13g18021.3 sequence type=CDS gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAATATGAATGACGAGAAAGAATTCACTGAACTGATTAAGTCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGACCCTGATGAGATTGATGAGTTTCTTGATCGCATTTACATGTCAAGAATTGGAATCCGTATGCTCATCGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATGGTGAATATGGAAGTGCTGCAGATGTTCGAATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGTTTTTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGACCATTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAAAATATTTACATATCTCTACAGTACAGCCAGAAATGCATCGTGGGATGAAAATGAACCTTCTGATCTTGGAACAACCGATAATATAAGTGTAAAAATGGCTGGAAATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGCGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGA
Predicted protein sequences of Glyma13g18021
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g18021.1 sequence type=predicted peptide gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKNMNDEKEFTELIKSIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRIYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYGEYGSAADVRIYGDPDFTFPYVPAHLHLMFFELVKNSLRAVQDHFMDSDEVAPPIRIIIADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNASWDENEPSDLGTTDNISVKMAGNGYGLPICRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP*
>Glyma13g18021.2 sequence type=predicted peptide gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKNMNDEKEFTELIKSIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRIYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYGEYGSAADVRIYGDPDFTFPYVPAHLHLMFFELVKNSLRAVQDHFMDSDEVAPPIRIIIADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNASWDENEPSDLGTTDNISVKMAGNGYGLPICRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP*
>Glyma13g18021.3 sequence type=predicted peptide gene model=Glyma13g18021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKNMNDEKEFTELIKSIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRIYMSRIGIRMLIGYIHTNMSPVNVARNASEDARSMCYGEYGSAADVRIYGDPDFTFPYVPAHLHLMFFELVKNSLRAVQDHFMDSDEVAPPIRIIIADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNASWDENEPSDLGTTDNISVKMAGNGYGLPICRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP*