SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17470 | AT | Annotation by Michelle Graham. TAIR10: Ca2+-activated RelA/spot homolog | chr3:5979868-5981968 FORWARD LENGTH=583 | SoyBase | E_val: 0 | ISS |
| GO:0015969 | GO-bp | Annotation by Michelle Graham. GO Biological Process: guanosine tetraphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0008728 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP diphosphokinase activity | SoyBase | N/A | ISS |
| KOG1157 | KOG | Predicted guanosine polyphosphate pyrophosphohydrolase/synthase | JGI | ISS | |
| PTHR21262 | Panther | GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| PF04607 | PFAM | Region found in RelA / SpoT proteins | JGI | ISS | |
| UniRef100_G7JR05 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP pyrophosphokinase n=1 Tax=Medicago truncatula RepID=G7JR05_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYG1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYG1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g18000 not represented in the dataset |
Glyma13g18000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g119600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18000.2 sequence type=transcript gene model=Glyma13g18000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAGGAACCAATTGAAAAAAAAAAGCAAAATAAAAAATGAAATGAAAGCTAACTACCGAACAACCACAAACATTGTTGTGGAGAAGAGAGAAAGCAAGCTGAATGGAGGTGTTGCAGTTGCTGGCTTCCGATTTTACCCTCCGCCATTCCCTTTCCAAGCCCACCGTCTCCCTTCCTCCCACTCACTCACTCTCCGTCGTCGTGTTCCGGCGGCGGAGATCACCCTGCGGCGGGCGGTGGTGGGCTCCGCGAGCATGCGCGGTGGAGGTGTCGGAGTCGGAGGGAGGGAAGATGGTGATGGAGCTGGTGGGAGCCTTCAACGAGTTGACGGAGAGAATGAACGTGCTGTCGACGAGCTCTTCGCGTCTTCTGTTTAAGTGCCTCAAACTCTCCATCCCCATCCTGCAGAGCTCTCCTCTCGCTCCCGATGGCCGTTCCCCTCTCTCCAAAGCCTTATCCGTCGCCTTGCTCCTCGCTGATCTCCAATAAATGTGAATGCAGATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAGTGCTTCATCCATTTGAAACGAATGACAGAACAAAACACACTCAATTTACTCCACTTGTGATATGATCATTAAGCTAGAGCCACGCGTAAGTGATGTAATTTCCATGTAAATTAATTAATGACAGAAATTCCAGAGATAAAGAAATTTGCAATATCTTATTTCTGACCTGTTGTTTTATAAGTTAATATTACCATAAACTGTACGCTCCTATAATGAGGATTAATGAACTCTGGTGATGGATAACTATACAAATGGTTCTAAGCATGCTTTACTGCTATTAATATTTTCACAAATCACAAGGCAATTACATTAACTTCTCTTAAGGTTAACATTCA
>Glyma13g18000.1 sequence type=CDS gene model=Glyma13g18000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTGTTGCAGTTGCTGGCTTCCGATTTTACCCTCCGCCATTCCCTTTCCAAGCCCACCGTCTCCCTTCCTCCCACTCACTCACTCTCCGTCGTCGTGTTCCGGCGGCGGAGATCACCCTGCGGCGGGCGGTGGTGGGCTCCGCGAGCATGCGCGGTGGAGGTGTCGGAGTCGGAGGGAGGGAAGATGGTGATGGAGCTGGTGGGAGCCTTCAACGAGTTGACGGAGAGAATGAACGTGCTGTCGACGAGCTCTTCGCGTCTTCTGTTTAAGTGCCTCAAACTCTCCATCCCCATCCTGCAGAGCTCTCCTCTCGCTCCCGATGGCCGTTCCCCTCTCTCCAAAGCCTTATCCGTCGCCTTGCTCCTCGCTGATCTCCAAATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAG >Glyma13g18000.2 sequence type=CDS gene model=Glyma13g18000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATGGATGCCGAGGTAATCTCTGCTGGGATATTCAGAGCAGTATTGGAGGCGGGTGAGTTGAGCATACATGAAATTCGGAATCAGATGGGTCTAGCCACTGCTCATTTGCTGCACGAGAGTTTGCGGGTGAATAATTTTCCATCCAGAATAGATGTTGTGGATGATGATAATGCTGCTGCATTGAGAAAGTTCTGCCTCACTTACTATGACATCAGGGCTTTGATTCTGGACCTGGCTTTGAAGCTTGACATGATGAGACACCTTGATTATCTGCCCAGATATCAGCAGCAGATTATTTCTATGCAGGTTATGAAGATACATGCTCCTCTTGCTCATGCTGTGGGAACTACCTACTTGTCACTGGAATTGGAAGATCTCTCGTTTCAGTACTTATTTCCTTATTCATATCTTTATGTGGATGCGTGGTTGCGAAGTCATGAGACTGGGGGTGTATCTCTTATTGACATCTACAAGGAGGAACTGCTCCGTAATCTAAAGGCTGATTCCTTGCTTGCTGAACTTGTGGATGATGTCTCGATCAAAGGTCGCTTTAAGAGTCGTTATAGCACAATGAAGAAGCTGTTGAAGGATGGTCGGAAGCCAGAAGATGTGAATGATGTACTTGGGATGCGAGTGATATTGAATCCTAAGGCTGGAGAGAATGCATTAGAGGCTGGAGAGAGAGCATGTTATAGGACTCATCAGATCATCCAATCTATGTGGAAGGAAATCCCTTATCGGACAAAGGATTATATTGCCAGGCCAAAAGCAAATGGATATAAAAGTTTGCATATGGCAGTTGATGTGAGTGAAAATGGTAAGACAAGACCATTGATGGAAATACAGATAAGAACAACTGAAATGGACAGGCTAGCAGTTGGTGGAACAGCTGCTCATTCATTATACAAGGCTGGCCTTACTGATCCTGAGGAGGCAAAGCGTCTGAAGACCATCATGTTGGCTGCAGCTGAATTGGCTGCGCTGCGCCTTAAAGATTTTCCAACAAGTACAAATCATAAAGGAATTGAAATTCACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAACGGAGACGGTAAAATTAGCATTGAGGAACTTACAGAAGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCCGAGAAATGATGCAGCTCCTTGACTCAAATAGTGATGGCTCCCTCAGTTCTGACGAATTCCATATGTTCCAAGAACAGGTTGAGTTGGTGCGTAATTTAGAGGTCCGAGATGATCAATACAAGAAATTATTGGATGAGAAGCTTCATATGGCAGATGAGAGTGGTTTAATTCAAGTTTATAGTAAGGAGTTCGGCAACAGGCTTGCGAGCTAG
>Glyma13g18000.1 sequence type=predicted peptide gene model=Glyma13g18000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVLQLLASDFTLRHSLSKPTVSLPPTHSLSVVVFRRRRSPCGGRWWAPRACAVEVSESEGGKMVMELVGAFNELTERMNVLSTSSSRLLFKCLKLSIPILQSSPLAPDGRSPLSKALSVALLLADLQMDAEVISAGIFRAVLEAGELSIHEIRNQMGLATAHLLHESLRVNNFPSRIDVVDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHLDYLPRYQQQIISMQVMKIHAPLAHAVGTTYLSLELEDLSFQYLFPYSYLYVDAWLRSHETGGVSLIDIYKEELLRNLKADSLLAELVDDVSIKGRFKSRYSTMKKLLKDGRKPEDVNDVLGMRVILNPKAGENALEAGERACYRTHQIIQSMWKEIPYRTKDYIARPKANGYKSLHMAVDVSENGKTRPLMEIQIRTTEMDRLAVGGTAAHSLYKAGLTDPEEAKRLKTIMLAAAELAALRLKDFPTSTNHKGIEIHQRDRVFRLLDKNGDGKISIEELTEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFHMFQEQVELVRNLEVRDDQYKKLLDEKLHMADESGLIQVYSKEFGNRLAS* >Glyma13g18000.2 sequence type=predicted peptide gene model=Glyma13g18000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQMDAEVISAGIFRAVLEAGELSIHEIRNQMGLATAHLLHESLRVNNFPSRIDVVDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHLDYLPRYQQQIISMQVMKIHAPLAHAVGTTYLSLELEDLSFQYLFPYSYLYVDAWLRSHETGGVSLIDIYKEELLRNLKADSLLAELVDDVSIKGRFKSRYSTMKKLLKDGRKPEDVNDVLGMRVILNPKAGENALEAGERACYRTHQIIQSMWKEIPYRTKDYIARPKANGYKSLHMAVDVSENGKTRPLMEIQIRTTEMDRLAVGGTAAHSLYKAGLTDPEEAKRLKTIMLAAAELAALRLKDFPTSTNHKGIEIHQRDRVFRLLDKNGDGKISIEELTEVMEELGAPGEDAREMMQLLDSNSDGSLSSDEFHMFQEQVELVRNLEVRDDQYKKLLDEKLHMADESGLIQVYSKEFGNRLAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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