Glyma13g17980 - SoyBase

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Report for Sequence Feature Glyma13g17980

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21648540
stop:	21650931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53040	AT	Annotation by Michelle Graham. TAIR10: late embryogenesis abundant protein, putative / LEA protein, putative \| chr3:19664797-19666405 REVERSE LENGTH=479	SoyBase	E_val: 5.00E-16	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010227	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ abscission	SoyBase	N/A	ISS
PTHR23241	Panther	LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED	JGI		ISS
PTHR23241:SF11	Panther	LATE EMBRYOGENESIS ABUNDANT (LEA)	JGI		ISS
PF02987	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_Q39801	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 51 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q39801_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39801	UniRef	Annotation by Michelle Graham. Best UniRef hit: 51 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q39801_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g17980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17980

Paralog	Evidence	Comments
Glyma17g04550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g119400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g17980

Limit To All Plant Sequences

>Glyma13g17980.1   sequence type=CDS   gene model=Glyma13g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAAGGTGGTTTCGGTTTTGGTTATAGCGATGATGTTGTTTGCCATGAACTGTAACTGCACTAGTGTTGGCCACATGCCTTCAACCAAAGAGGAAGGTCACGATTTTCAGGAGTCTAAAGCCAAGACCACACAAACTGCGAACAAGGCCATGGAAACTGGTAAAGAGGGACAAGAAGCCGCAGAGTCATGGACAGAATGGGCTAAAGAGAAACTCAGTGAAGGTCTTGGCTTCAAACATGATCAGGAATCCAAAGAATCCACCACTAACAAAGTCTCTGATTATGCCACTGACACTGCACAGAAATCCAAGGATTATGCAACTGACACTGCTCAGAAATCAAAGGACTATGCAGGTGATGCTGCTCAGAAATCAAAGGACTACGCAGGTGATGCTGCTCAGAAAACCAAAGACTATGCCAGTGACACTGCACAGACATCAAAGGACTATGCTGGTGATGCTGCTCAGAAATCAAAGGGCTATGTTGGTGATGCTGCACAAAAGACCAAAGAATATGTTGGTGATGCAGCACAGAAGACAAAGGATTATGCCACTGACGCAGCACAGAAGACCAAAGATTATGCTACTCAGAAGACCAAGGACTATGCAAGTGATGCAACTGATGCTGCAAAGAAGACTAAAGATTATGCTGCTCAGAAGACTAAGGACTATGCAAGTGAAGCTAGTGATGTTGCACAGAACACAAAAGATTATGCTGCTCAGAAGACCAAGGACTATGCCAGCGGTGGTGCGCAGAAGACCAAGGATTATGCCAGCGGTGGTGCGCAGAAGACCAAGGACTATGCAAGTGATGCTGCGCAGAAGACCAAGGACTATGCAAGTGATGGTGCTCAAAAGAGCAAAGAATATGCGGGTGATGTAGCACTGAATGCCAAAGATTATGCTCAAAAAAGCAAAGATTACGCAGGTGATGCTGCACAGAATGTCAAAGATTATGCAAGTGATGCAGTGCAGAAGAGAAAAGAGTATTCTGGTGATGCTTCTCACAAGAGCAAAGAGGCTTCTGATTATGCCAGTGAGACGGCTAAGAAGACCAAAGATTATGTCGGTGATGCTGCTCAGAGAAGCAAAGGGGCTGCTGAATATGCTAGTGATGCGGCTCAGAGGACCAAAGAGTATGCTGGTGATGCTACCAAGAGAAGCAAAGAGGCTTCTAATGATCATGCCAATGACATGGCTCAGAAGACCAAAGACTACGCCAGTGACACTGCTCAGAGAACCAAGGAAAAACTCCAAGACATTGCATCTGAAGCTGGTCAATACAGTGCAGAGAAAGCTAGAGAAATGAAGGATGCAGCAGCAGAGAAGGCAAGTGACATAGCAAAGGCTGCAAAGCAAAAATCACAAGAGGTGAAAGAGAAATTAGGTGGACAACACCGGGATGCCGAGCTTTGA

Predicted protein sequences of Glyma13g17980

Limit To All Plant Sequences

>Glyma13g17980.1   sequence type=predicted peptide   gene model=Glyma13g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKVVSVLVIAMMLFAMNCNCTSVGHMPSTKEEGHDFQESKAKTTQTANKAMETGKEGQEAAESWTEWAKEKLSEGLGFKHDQESKESTTNKVSDYATDTAQKSKDYATDTAQKSKDYAGDAAQKSKDYAGDAAQKTKDYASDTAQTSKDYAGDAAQKSKGYVGDAAQKTKEYVGDAAQKTKDYATDAAQKTKDYATQKTKDYASDATDAAKKTKDYAAQKTKDYASEASDVAQNTKDYAAQKTKDYASGGAQKTKDYASGGAQKTKDYASDAAQKTKDYASDGAQKSKEYAGDVALNAKDYAQKSKDYAGDAAQNVKDYASDAVQKRKEYSGDASHKSKEASDYASETAKKTKDYVGDAAQRSKGAAEYASDAAQRTKEYAGDATKRSKEASNDHANDMAQKTKDYASDTAQRTKEKLQDIASEAGQYSAEKAREMKDAAAEKASDIAKAAKQKSQEVKEKLGGQHRDAEL*

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