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Report for Sequence Feature Glyma13g17860

Feature Type:gene_model
Chromosome:Gm13
Start:21555347
stop:21557100
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g17860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48300AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:17847391-17848338 FORWARD LENGTH=285 SoyBaseE_val: 4.00E-35ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0019432GO-bp Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004144GO-mf Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity SoyBaseN/AISS
PF01257PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit JGI ISS
UniRef100_A8VTA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol acyltransferase n=1 Tax=Arachis hypogaea RepID=A8VTA4_ARAHY SoyBaseE_val: 2.00E-56ISS
UniRef100_I1LYE9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYE9_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma13g17860
LocusGene SymbolProtein Name
DGAT3B diacylglycerol acyltransferase 3 gene B

Expression Patterns of Glyma13g17860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g17860 not represented in the dataset
Glyma13g17860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17860
ParalogEvidenceComments
Glyma17g04650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g118300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g17860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g17860
>Glyma13g17860.2   sequence type=CDS   gene model=Glyma13g17860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCTCCGGCAGCGTTCTCCGCCAGCTCAGCTACGTCTCCGGCTATGGGACCCCCACGCGTTCCCGTGGCGTGGCTTCTCGTGTTGGGCTGAGAATGGGGACGGGTTCTGGTTTCTGTGACGAGGGGCATCTGCAGTATTACCAGGACACCAAAAAGATTCTGACCCCTAAGAAGTTGAAATTGCTCAAGGGTTTCTCCAAATTAGGGCTTGCATCGGATCCCGAGAAACTTGCCATGTTCCATGATCTTCAACAAAACCTCACCTCGGATGCTGGAGAGGTGTTACTGAGAGAGTTAGAAGCAGCAAGAGCAAAGGAGAAGGAAATGAAGAAAAAAAGAAAGCAAGAGATAAAGGCCAAACTCAAAGCCTCCAAGATGAATTGTGAATCTTCTTCATCTTCATCGTCTGAATCAAGTGACAGTGATGGTGATTGTGATCAAGTGGTTGACATGAACTGCTTCAGAGCTGGTGCTGGTGTTGTTGTCCCTGCACCTGTGGAGGAATCCCCACTGCCCAAGACCCCCATTGTTGAGGATACAAATGCAAAGGCGCATCGTGATGCCATGGCATTGTGTTCTAAGAATGATATCTCTGTTAGCAGTGTTAGAGATTGTATTAAGAGCGAGAGTGCTGTTGTTACCGCTGCTCCTCAAAAGAGGATTGAGGTCTGCATGGGTACCAAGTGCAAAAGATCAGGGGCTGCTGCACTGATGCAAGAGTTTGAGAGAGTGGTGGGTGTCGAAGGTGGTGCTGTTGTTTCATGCAAGTGCATGGGCAAGTGCAAAACTGCTCCTAATGTTAAAGTTCAGAATTCTGTCGATCATAGCCTTGCTCGAGGACTCGATGATTCTGTTAACATTCCTGCTAACCCTCTCTGCATTGGAGTTGGCTTGGGGGATGTGGATGCCATTGTGGCTAGATTTTTGGGAGAGAGTCACACAGATATAGGTATGATAGGTGCAGCTACAGCTACTTGA
Predicted protein sequences of Glyma13g17860
>Glyma13g17860.2   sequence type=predicted peptide   gene model=Glyma13g17860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISGSVLRQLSYVSGYGTPTRSRGVASRVGLRMGTGSGFCDEGHLQYYQDTKKILTPKKLKLLKGFSKLGLASDPEKLAMFHDLQQNLTSDAGEVLLRELEAARAKEKEMKKKRKQEIKAKLKASKMNCESSSSSSSESSDSDGDCDQVVDMNCFRAGAGVVVPAPVEESPLPKTPIVEDTNAKAHRDAMALCSKNDISVSSVRDCIKSESAVVTAAPQKRIEVCMGTKCKRSGAAALMQEFERVVGVEGGAVVSCKCMGKCKTAPNVKVQNSVDHSLARGLDDSVNIPANPLCIGVGLGDVDAIVARFLGESHTDIGMIGAATAT*






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