SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09520 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3071248-3072030 REVERSE LENGTH=260 | SoyBase | E_val: 5.00E-28 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_E5GC39 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GC39_CUCME | SoyBase | E_val: 3.00E-38 | ISS |
| UniRef100_I1LYE7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYE7_SOYBN | SoyBase | E_val: 2.00E-142 | ISS |
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Glyma13g17840 not represented in the dataset |
Glyma13g17840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g118100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17840.3 sequence type=transcript gene model=Glyma13g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCGTTGGCAAAAGCAGCGCTTAGTCGTTCCCACCATTTTTCCTAATCCCATTTCTCTTTTTCTCGTTCTCTTGAATTTCTAGGGTTACCGTTGGAACCACTCGCCAGCCACGTACGTACGGAGGCTCTCTCTTCCTCCGCCATGAACTCACGGCAATCCTCTCTGTCGCCCTGTGACATCTGCGGCGCCACCCAAACCCTATCTCTGACCATCCACAACATCCGCCACCGCGCCCACACCTGCCGCCACTGCACCAACTGCGTCCTCAAGCAGCACCCTGGCCTCTTCTGCCCTCTCTGCTTCGAACTCCACGACGACTCGCCCCTCCCTCCCCACCACCGCCTCATGTGCGTCCGCTGCCCCGCCGTCGCACACCGTTCCTGTGCGTTCCCCTCCACCAACCCCTCCGCTGCACCCGCGCCAGCACCACCGTTCTTCTGCCCTACTTGTCTCGATTCTAACTTCACCTACTTCAAACTCCCCGACCGCAAGACCGGAGCCGTCGACGTCCAGTCCGCCAAGGTGCTCGTCACTGCTGCCCGGATCGCTGCCGTGTCCATGAGCAAGGCGGCCGCCGTGGCACGGTTCGATGCGGAACGTCGCGCCAGGGAGGCCGCCGTGGCCAGGAAGAGGGCGAAGGACGCGCTGGAGCATCTCGCGGAGATCCTCGCCAGGGAGCAGGCGGAGCAGGACGAGGAGGAACAGAACGGCACCGTTTCTGCTGGCCGGAGGCGTGGCGCGTAATAGTAGGTTGGCTTTGACATGTAACTGGTTTGGCTGGTGGAATAAGGGTCAATTGGTGGCAATGCTGGTGGTTGGCTTTGACATGGTCCATATGACAGCAGAGGAACAAAATACTGTTTTCCAATGAAACCTTCAATGGCAATAAATTGTTGGATGATGCAGCATTCTTACTCTGGACATGGCTTAGAAGTTTGGAGAAAGATTTTACAACCCATTTTAACCAATGGTCAAGTAATCTTAGAGTTGGTTGTGTGTATTAGCCGAGGATAGCAACCATAGGATAACAGTAGATATAGACTCTTGTATGTAGTCAGCTTTTGGTTCCTATCAAGATTGTATTAAGCCTGATATCCAGAACCAATTGTATGGACTATCACAATTATGTACTCTTTGTACCTCTGGTACTTCAATATATACATATATTATATT
>Glyma13g17840.1 sequence type=CDS gene model=Glyma13g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTCACGGCAATCCTCTCTGTCGCCCTGTGACATCTGCGGCGCCACCCAAACCCTATCTCTGACCATCCACAACATCCGCCACCGCGCCCACACCTGCCGCCACTGCACCAACTGCGTCCTCAAGCAGCACCCTGGCCTCTTCTGCCCTCTCTGCTTCGAACTCCACGACGACTCGCCCCTCCCTCCCCACCACCGCCTCATGTGCGTCCGCTGCCCCGCCGTCGCACACCGTTCCTGTGCGTTCCCCTCCACCAACCCCTCCGCTGCACCCGCGCCAGCACCACCGTTCTTCTGCCCTACTTGTCTCGATTCTAACTTCACCTACTTCAAACTCCCCGACCGCAAGACCGGAGCCGTCGACGTCCAGTCCGCCAAGGTGCTCGTCACTGCTGCCCGGATCGCTGCCGTGTCCATGAGCAAGGCGGCCGCCGTGGCACGGTTCGATGCGGAACGTCGCGCCAGGGAGGCCGCCGTGGCCAGGAAGAGGGCGAAGGACGCGCTGGAGCATCTCGCGGAGATCCTCGCCAGGGAGCAGGCGGAGCAGGACGAGGAGGAACAGAACGGCACCGTTTCTGCTGGCCGGAGGCGTGGCGCGTAA >Glyma13g17840.3 sequence type=CDS gene model=Glyma13g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTCACGGCAATCCTCTCTGTCGCCCTGTGACATCTGCGGCGCCACCCAAACCCTATCTCTGACCATCCACAACATCCGCCACCGCGCCCACACCTGCCGCCACTGCACCAACTGCGTCCTCAAGCAGCACCCTGGCCTCTTCTGCCCTCTCTGCTTCGAACTCCACGACGACTCGCCCCTCCCTCCCCACCACCGCCTCATGTGCGTCCGCTGCCCCGCCGTCGCACACCGTTCCTGTGCGTTCCCCTCCACCAACCCCTCCGCTGCACCCGCGCCAGCACCACCGTTCTTCTGCCCTACTTGTCTCGATTCTAACTTCACCTACTTCAAACTCCCCGACCGCAAGACCGGAGCCGTCGACGTCCAGTCCGCCAAGGTGCTCGTCACTGCTGCCCGGATCGCTGCCGTGTCCATGAGCAAGGCGGCCGCCGTGGCACGGTTCGATGCGGAACGTCGCGCCAGGGAGGCCGCCGTGGCCAGGAAGAGGGCGAAGGACGCGCTGGAGCATCTCGCGGAGATCCTCGCCAGGGAGCAGGCGGAGCAGGACGAGGAGGAACAGAACGGCACCGTTTCTGCTGGCCGGAGGCGTGGCGCGTAA
>Glyma13g17840.1 sequence type=predicted peptide gene model=Glyma13g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSRQSSLSPCDICGATQTLSLTIHNIRHRAHTCRHCTNCVLKQHPGLFCPLCFELHDDSPLPPHHRLMCVRCPAVAHRSCAFPSTNPSAAPAPAPPFFCPTCLDSNFTYFKLPDRKTGAVDVQSAKVLVTAARIAAVSMSKAAAVARFDAERRAREAAVARKRAKDALEHLAEILAREQAEQDEEEQNGTVSAGRRRGA* >Glyma13g17840.3 sequence type=predicted peptide gene model=Glyma13g17840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSRQSSLSPCDICGATQTLSLTIHNIRHRAHTCRHCTNCVLKQHPGLFCPLCFELHDDSPLPPHHRLMCVRCPAVAHRSCAFPSTNPSAAPAPAPPFFCPTCLDSNFTYFKLPDRKTGAVDVQSAKVLVTAARIAAVSMSKAAAVARFDAERRAREAAVARKRAKDALEHLAEILAREQAEQDEEEQNGTVSAGRRRGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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