SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02890 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin family protein | chr4:1278747-1279664 REVERSE LENGTH=305 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| KOG0005 | KOG | Ubiquitin-like protein | JGI | ISS | |
| PTHR10666 | Panther | UBIQUITIN | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| UniRef100_Q3E7T8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyubiquitin 14 n=13 Tax=core eudicotyledons RepID=UBQ14_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_Q3E7T8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Polyubiquitin 14 n=13 Tax=core eudicotyledons RepID=UBQ14_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma13g17830 not represented in the dataset |
Glyma13g17830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g117900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17830.3 sequence type=transcript gene model=Glyma13g17830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTCTTTATCTTGGCGTGTGTCAATGACCCCCACCATACACGTGGCAAATCTTTATTCGTTGACTTTTGGATATTTTCGTCATTGTGACATCGCAACCAAGCTATAAGTACGACCCCTTCCACCCCTCTTTCATTCATAGCTATTCGCAGTTCCCAAATTCATTTTAATCCTAATTCTGCACTTCTTGATCATTCGATTTTTCTCCTCAAGATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCCGACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAACATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCGGACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCAGATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAACATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCGGCTTCGTGGTGGCATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGTTCTGATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCTTGCATCTCGTCCTTCGCCTTCGCGGTGGTTTTTAAGCGTGTTTTTTTTCAAGTGTTCTTGTTTTAAGCGTGTCTTTTTTCAAGTGTTCTTGTATGTCATGTCTGTTATGTTCAATTTCTCCCTTGAACTTGTTTGCTGTTCTGGTTTAGGTGCTGCTTTTTATGTTTTAATATGATGTATTGAGCTCGTTTCGCCAAAAGAATTAAATATCAATATCGTATCATAGTTAAATTCATATTTCGTATTATTACTTCAAATATATAGTTTTTTATTAACGAATGTTAAGAAAATTCAGATTCTAGTCATACAACTTAACCAGCGTAACCAATA
>Glyma13g17830.1 sequence type=CDS gene model=Glyma13g17830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCCGACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAACATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCGGACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCAGATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCTTGCATCTCGTCCTTCGCCTTCGCGGTGGTTTTTAA >Glyma13g17830.3 sequence type=CDS gene model=Glyma13g17830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCCGACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAACATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCGGACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCAGATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAACATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCGGCTTCGTGGTGGCATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGTTCTGATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCTTGCATCTCGTCCTTCGCCTTCGCGGTGGTTTTTAA
>Glyma13g17830.1 sequence type=predicted peptide gene model=Glyma13g17830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* >Glyma13g17830.3 sequence type=predicted peptide gene model=Glyma13g17830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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