Report for Sequence Feature Glyma13g17800
Feature Type: gene_model
Chromosome: Gm13
Start: 21520430
stop: 21524539
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g17800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G04450 AT
Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528
SoyBase E_val: 2.00E-59 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_G7IQG1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IQG1_MEDTR
SoyBase E_val: 2.00E-79 ISS
UniRef100_I1LYE3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYE3_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma13g17800
Locus Gene Symbol Protein Name
WRKY134 WRKY Transcription Factor
Expression Patterns of Glyma13g17800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g17800
Paralog Evidence Comments
Glyma17g04710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g17800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g117600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g17800
Coding sequences of Glyma13g17800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g17800.1 sequence type=CDS gene model=Glyma13g17800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGCAAAATTGCATTGAAAAAATTGCTGGAAGTTCAGGAAAAGGCATACGTTAATGATACAGATGCAATCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAATTGGGCTTGCTGCAAATTGAGTTAGAGGAGGTGAAGAAGGAGAATCAGAATTTAAGGTCAATGCTAAATGAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGAAGGACAGCCAGCAGAATAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGGTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCGCGATCAGAATCATCTTTGATGGGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGAAGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAGGTCCATGGCGTGCACAACATCAGCAGCACTGAAAATGTTCCTTTCTGGCTCAACCACTAGTTCACATGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATGCACTTCTACCTACTATCCATCTGCAGCACCATCATGTCCAACTATAACTTTGGACTTAACCCAAACCTCTAAGAACAACATGAAATTCCCAAGTGCTATTTCTTCAAACCATTTGCAACCTTTTCCACTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCTTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAACGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAAATCACTGCCAACTTTGTAG
Predicted protein sequences of Glyma13g17800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g17800.1 sequence type=predicted peptide gene model=Glyma13g17800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGKIALKKLLEVQEKAYVNDTDAINWTEEPSIKNTLGSSLLSLSLNNLEPPQNHEQQNLNQLGLLQIELEEVKKENQNLRSMLNEISEHYAALQNQLLLAMQQKKLSSSPRNNEDMQKDSQQNNMEKPALPSCRQFLNTGKINNRVILQEAKIVEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSMACTTSAALKMFLSGSTTSSHGSTYSYSNSDLFSPLCTSTYYPSAAPSCPTITLDLTQTSKNNMKFPSAISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQKSLPTL*