Glyma13g17760 - SoyBase

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Report for Sequence Feature Glyma13g17760

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21485319
stop:	21488922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17590	AT	Annotation by Michelle Graham. TAIR10: transcription regulatory protein SNF5, putative (BSH) \| chr3:6017313-6019591 REVERSE LENGTH=240	SoyBase	E_val: 3.00E-143	ISS
GO:0006338	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin remodeling	SoyBase	N/A	ISS
GO:0040029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic	SoyBase	N/A	ISS
GO:0000228	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10019	Panther	SNF5	JGI		ISS
PF04855	PFAM	SNF5 / SMARCB1 / INI1	JGI		ISS
UniRef100_D7RJ53	UniRef	Annotation by Michelle Graham. Best UniRef hit: SNF5 n=1 Tax=Glycine max RepID=D7RJ53_SOYBN	SoyBase	E_val: 3.00E-174	ISS
UniRef100_D7RJ53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SNF5 n=1 Tax=Glycine max RepID=D7RJ53_SOYBN	SoyBase	E_val: 3.00E-174	ISS

Expression Patterns of Glyma13g17760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17760

Paralog	Evidence	Comments
Glyma17g04750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g117200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g17760

Limit To All Plant Sequences

>Glyma13g17760.1   sequence type=CDS   gene model=Glyma13g17760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACTCCGATTTCGGGTTTCTACAGAAACCCCGTGAAGTTCAGAATGCCAACTGCGGAGAACTTGGTTCCCATTCGATTGGACATCGAAATCGAGGGGCAGAGATACAAGGACGCGTTCACTTGGAACCCTTCTGATCCCGATTCCGAGGTTGTCGTCTTTGCAAAAAGGACTGTTAAAGACTTGAAGCTCCCTCCCGCCTTTGTAACACAAATTGCTCAATCAATTCAATCACAGCTTTCGGAGTTTCGGTCCTATGAAGGCCAGGATATGTATGCTGGGGAGAAGATTGTTCCGATCAAGCTTGATCTTCGTGTTAATCATACGCTCGTGAAGGACCAGTTTTTATGGGACTTGAACAACTTTGAGAGTGACCCTGAAGAGTTTGCCAGAATCTTCTGCAAGGACACGGGCATTGAAGATCCTGAGGTTGGACCAGCTATTGCCTTTGCTATCAGAGAGCAGCTTTATGAGATTGCAATTCAAAGTGTGGTTTCAGCAAGAGAAAGCAGAATGAGCAAGAAGGGTCGTCGAGGGGCTGAATATACTCCAGTCAGTAAAGGAGGTGCAGCAGCAGTGGACTTGGTCAAGTTGTTTGGTCCGAAATCTAGTGTAGTTCGGAAAAGAAAGGAGTGGGACGTATATGAACCTATTGTGGACCTACTATCCAACGAGGAAGTTGATGCCCTTGAAGCGAAGGAAGAGAGAAATTTCAGGTGA

Predicted protein sequences of Glyma13g17760

Limit To All Plant Sequences

>Glyma13g17760.1   sequence type=predicted peptide   gene model=Glyma13g17760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTVKDLKLPPAFVTQIAQSIQSQLSEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDLNNFESDPEEFARIFCKDTGIEDPEVGPAIAFAIREQLYEIAIQSVVSARESRMSKKGRRGAEYTPVSKGGAAAVDLVKLFGPKSSVVRKRKEWDVYEPIVDLLSNEEVDALEAKEERNFR*

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