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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17600 | AT | Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 31 | chr3:6020281-6021040 REVERSE LENGTH=158 | SoyBase | E_val: 3.00E-43 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PF02309 | PFAM | AUX/IAA family | JGI | ISS | |
| UniRef100_G7JR39 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA4 n=1 Tax=Medicago truncatula RepID=G7JR39_MEDTR | SoyBase | E_val: 5.00E-86 | ISS |
| UniRef100_I1LYD6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYD6_SOYBN | SoyBase | E_val: 7.00E-178 | ISS |
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Glyma13g17750 not represented in the dataset |
Glyma13g17750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g117100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17750.2 sequence type=transcript gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTCAAAAAAAGTAATAAATTGAAGACCGTGTAACTTAGGCCTTGTGGACATGTTGCCCACCCTCATGGCAAATCAAAACCAAAGAGAGTGTGCTGAATGTCTGACTTGGCTTTGCTTTTGCTTATCATACTCTCTCTTTCTTTCTTTCTTTTTTGGTATAAAGTAGCTTCTGTTGTGTATATATATAAGGACCCTAAGGTGGCGGTTTTTCTTTTCAGTCTCGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGTAAGCATTTGAAACCTTCATAAAATCATTTCCTTTTGCACCTTCTTTGAAACATCATTTTTAGAGATCAATTTGTTTTTTT >Glyma13g17750.3 sequence type=transcript gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTCAAAAAAAGTAATAAATTGAAGACCGTGTAACTTAGGCCTTGTGGACATGTTGCCCACCCTCATGGCAAATCAAAACCAAAGAGAGTGTGCTGAATGTCTGACTTGGCTTTGCTTTTGCTTATCATACTCTCTCTTTCTTTCTTTCTTTTTTGGTATAAAGTAGCTTCTGTTGTGTATATATATAAGGACCCTAAGGTGGCGGTTTTTCTTTTCAGTCTCGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAGTTAATTTAATAATGTATACAATCTCTCTCACAACACAAGCTCCTCCTCAATTTTCATTGTTCATAAATTTTTGCTGTAGATCTAGTTATTAATTAGTGGGTTGGTGAAACTCGTTGAAGTATTTCACCAAAAAGAATGGATCCCGTGATTATCATATATCTAATAGCTTTATACACCGAAAAACAATATAGATGTGTAACTTCTTACCTAATTCTCAATTCAGTACATAGCTGCAGTATTCCTAGTCTCTCTGTTTGATGATGGAGTCATCTAATTTTCCTCTTTGTTTTGGAACTAGCTCCATTATTTTGTAGTCATTTGGAACAATGCATGTCCCTTTTGTCTTCATACCTTTAATGCATGATGTTTCTTGGTGTCTCTTTTATGATGGAATAGTCCAAAATTTTCAAGCTTGGTTTGGAACTAGCTCAATTAATTTTTTAGTGATTTGGTTGGTATATTGCACCTTCCTTCCATGAATTTTACCTACAAGTTGAAATATGAAATACTCTAAATCGTGTGTTACTTAAAATGTATCAAAGGTAATAGTGAAACTATAAAAAGAAGGTATCCTAATTTCCCTAGAGGGGCCTTTTTTCTGCTGTCTCTGCTTTGATGTGTTTGGCTTTGTTGGGTACAACATAATGATGCTTATGGTGTCCACACCCCTCGTGTC
>Glyma13g17750.1 sequence type=CDS gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACTTGGCTTTGCTTTTGCTTATCATACTCTCTCTTTCTTTCTTTCTTTTTTGGTATAAAGTAGCTTCTGTTGTGTATATATATAAGGACCCTAAGGTGGCGGTTTTTCTTTTCAGTCTCGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGTCCTAACTCTCAACCTCTTAATTCTAGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG >Glyma13g17750.2 sequence type=CDS gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACTTGGCTTTGCTTTTGCTTATCATACTCTCTCTTTCTTTCTTTCTTTTTTGGTATAAAGTAGCTTCTGTTGTGTATATATATAAGGACCCTAAGGTGGCGGTTTTTCTTTTCAGTCTCGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGTAAGCATTTGAAACCTTCATAA >Glyma13g17750.3 sequence type=CDS gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACTTGGCTTTGCTTTTGCTTATCATACTCTCTCTTTCTTTCTTTCTTTTTTGGTATAAAGTAGCTTCTGTTGTGTATATATATAAGGACCCTAAGGTGGCGGTTTTTCTTTTCAGTCTCGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGA
>Glyma13g17750.1 sequence type=predicted peptide gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDLALLLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQFHSLEDMGTLEQIDAPQTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTNILCPNSQPLNSRNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC* >Glyma13g17750.2 sequence type=predicted peptide gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDLALLLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQFHSLEDMGTLEQIDAPQTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTNILCKHLKPS* >Glyma13g17750.3 sequence type=predicted peptide gene model=Glyma13g17750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDLALLLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQFHSLEDMGTLEQIDAPQTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTNIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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