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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17630 | AT | Annotation by Michelle Graham. TAIR10: cation/H+ exchanger 19 | chr3:6029201-6031773 FORWARD LENGTH=800 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006885 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of pH | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005770 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: late endosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005451 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation transport | SoyBase | N/A | ISS |
| GO:0015299 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| KOG1650 | KOG | Predicted K+/H+-antiporter | JGI | ISS | |
| PTHR16254 | Panther | POTASSIUM/PROTON ANTIPORTER-RELATED | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| UniRef100_B9HXD8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cation proton exchanger (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXD8_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BF09 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BF09 related cluster n=1 Tax=unknown RepID=UPI000233BF09 | SoyBase | E_val: 0 | ISS |
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Glyma13g17670 not represented in the dataset |
Glyma13g17670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g116400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17670.2 sequence type=transcript gene model=Glyma13g17670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAACAACGTGGTTTCAACTGGTCTTACCACACATAAGTGCACCTATATATAGTTACATAGAGTTGTAGAAGCGTGCTATATATAGAACCGAAGAGAAGAGAAGTGAAGAATCTCCAAGATTCATATTCTCCCTTTCGTCGAACAACACATAGGCACGAAAGCATTCTTCTTCTACTTCACCCTGATGAGTTTGTGAGCATTGTTTTTAAAAGCAAGTGAATGATTGATATCGATGGCGACGGCTAACAACGCGTCATGCCCAGCGTTCATGAAGGCAACGTCGAATGGGGCGTTCCAACATGAGAACCCCCTCGATTATGCGCTTCCTCTGTTAATCCTCCAGATTTGTTTGGTCGTTGTTTTTACTAGAGTTATTGCATTCCTCTGCAGACCCCTCAGACAACCCCGAGTCATTGCTGAGATCATTGGTGTTGCTAGCTGCACCTTGTTGATGCATCTAGCACTTAAGAGGAAAAGACTGAAATATCTTTGATTTGTAAACTTGATCCGTACGATTTATGATCACCCTCACCCTCACGCACACTCAGCACAAATGCAAAGAAAGCACAGGAGCAACTTTGGTATTTTAAGCACCAACAATAATCCTGGGAGGAATACTACTTGGGCCATCTGCAATTGGACGAAATGAGAAGTTTCTGAGCACGGTTTTCCCAAAGAAAAGCATAACGGTTCTTGACACACTAGGCAACGTTGGTCTTTTGTTTTTCTTGTTTCTAGTTGGTCTTGAGCTTGACATGCGTGCTATTCGCCGTACTGGTCACAAGGCCTTAGCCATTGCCCTTTGTGGGATCACTGTGCCTTTTGTTCTTGGCATTGGCACTTCTTTTGCTCTTAGAGCCACCGTGTCCAAAGGTGCTGAGCCAGTTTCATTTCTTGTCTTCATGGGTGTTGCACTCTCAATCACTGCCTTTCCTGTCCTCGCTAGGATCCTAGCTGAGCTTAAACTCCTCACCACTGATGTTGGTCGCATAGCAATGTCAGCTGCAGCTGTGAATGATGTTGCAGCTTGGATTCTTCTTGCTCTTGCCATAGCCATTTCTGGTTCTAACGGATCACCCTTTGTTCCTCTTTGGGTCTTGCTCTCTGGTGTTGCTTTTGTTATCTTTGCTGTCTTTGCCATTAGGCCATTGCTTGTAGCTATGGCTAACCGTTCCCCTGAGGGTGAGCCAGTGAAGGAGGTGTACATATGCATCACATTGACACTGGTTTTGGCTTGTAGTTTTGTCACTGATACTATTGGAATCCATGCCCTCTTTGGGGCTTTTGTGATTGGTACCATTATGCCCAAAGAGGGTTCATTTTCTGTAGTGATGATTGAGAAGATAGAAGACCTGGTGTCTGGCCTTTTCCTGCCACTGTTTTTTGTGTCTAGTGGCTTGAAGACTAATGTGGCAACTATTAGTGGAGGACTTTCTTGGGCAATGTTGGTGCTTGTTATATTCAATGCTTGCTTTGGCAAGATTGTTGGCACAATAGTTGTGTCGTTAACGTGCAAGGTGCCTTCTCAAGAAGCCGTGGCACTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATAGTTCTCAACATTGGGAAGGACCGTAAGGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTGATGGCTGTATATAAACCAGCTCGCAGAGGAGCACCCTACAAGCACAGAACAATTCAGCGCAGAGATCCTGACACTGAGCTCCGAATGCTAGCTTGCTTCCACACCACCCGCAACATTCCCACGTTAATCAATCTCATAGAGTCTTCCCGCGGAATTCGAAAGAGAGGAAAGCTTTGCATCTATGCCATGCACTTGATGGAACTCTCAGAGCGATCTTCAGCAATCACAATGGTTCACAAGGCACGCAAGAATGGCATGCCCTTCTGGAACAAGAAACCGGATGACAAAGATCAAATGATCATTGCTTTTCAGGCTTATGAGAAACTAAGAAGTGTCAATGTGCGCCCCATGACAGCCATCTCTGCTCTCAATAGCATCCATGAGGATATTTGTACTAGTGCTCACCAAAAACGTGCAGCCATGATTATCCTCCCATTCCACAAACACCAACGTGTGGATGGATCAATGGAGTCACTAGGACATTCACTCCATGTGATGAATCAGCTTGTGCTAAGCCATGCTCCTTGCTCAGTGGGAATTTTGGTTGATCGAGGTCTTGGAGGGACAAGCCAAGTCCAAGCTAGTGATGTGTCTTATAAGGTTGTTGTACCCTTCTTTGGAGGACGTGATGATCGTGAAGCACTTTGTTATGGTATGAGAATGGCTGAGCACCCGGGGATTTTGCTCAATGTGGTTAAGTTTGTGCCCCCACCTGGGGCATCATTGGCCTTTGGTGCTAAATTGGTTGGGATGTCATCGAACAAGGACAAGAAAGCAATGGAAGTGGTTGGTGGCAGTTATTATGATGATAAACAACAAGATGATCAATTGTGGAGTGAGTTTTTAAGTGCATGCAACAACAACCAAGAGTCAATGAAGTATGAGCAAAAACTGGTGGCAAGCAAAGGTGATATTGAGGCAGCATTGAAGGAAATGAATAGGAGCAATCTAATATTGGTTGGTAGAATGCCATCAGTAGGACCTTTGGTTAGCAGAAGTGATTGTCCAGAACTTGGACCTGTTGGAAGCTACATGGCTTCTTCAGATTTCTCCACTGTTACATCAGTTATGGTAATTCAGCAATATAATCCTTCAACTGACATTCATCCACTAGTGATGGAGGAATTTGATTACCCAGATAAGCTAGAGCCAAACGCACCAAGGAGTTAATGTGGCATTAAAGCTGGAGTTGTCTTTTGGTTATAACTTATAACTTACGAAACAAGGCGGATGCTCATAATGTTGGAAATAAATTTGTATGTCCAGGATCTAAGTTATCATGTAATCAATTCTAATTTTAATAATAAAGTATTATTTTATTTTTATTATCATATTTCTCTATTTGATTAAATAGTTCATTTGATA
>Glyma13g17670.1 sequence type=CDS gene model=Glyma13g17670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGGCTAACAACGCGTCATGCCCAGCGTTCATGAAGGCAACGTCGAATGGGGCGTTCCAACATGAGAACCCCCTCGATTATGCGCTTCCTCTGTTAATCCTCCAGATTTGTTTGGTCGTTGTTTTTACTAGAGTTATTGCATTCCTCTGCAGACCCCTCAGACAACCCCGAGTCATTGCTGAGATCATTGGAGGAATACTACTTGGGCCATCTGCAATTGGACGAAATGAGAAGTTTCTGAGCACGGTTTTCCCAAAGAAAAGCATAACGGTTCTTGACACACTAGGCAACGTTGGTCTTTTGTTTTTCTTGTTTCTAGTTGGTCTTGAGCTTGACATGCGTGCTATTCGCCGTACTGGTCACAAGGCCTTAGCCATTGCCCTTTGTGGGATCACTGTGCCTTTTGTTCTTGGCATTGGCACTTCTTTTGCTCTTAGAGCCACCGTGTCCAAAGGTGCTGAGCCAGTTTCATTTCTTGTCTTCATGGGTGTTGCACTCTCAATCACTGCCTTTCCTGTCCTCGCTAGGATCCTAGCTGAGCTTAAACTCCTCACCACTGATGTTGGTCGCATAGCAATGTCAGCTGCAGCTGTGAATGATGTTGCAGCTTGGATTCTTCTTGCTCTTGCCATAGCCATTTCTGGTTCTAACGGATCACCCTTTGTTCCTCTTTGGGTCTTGCTCTCTGGTGTTGCTTTTGTTATCTTTGCTGTCTTTGCCATTAGGCCATTGCTTGTAGCTATGGCTAACCGTTCCCCTGAGGGTGAGCCAGTGAAGGAGGTGTACATATGCATCACATTGACACTGGTTTTGGCTTGTAGTTTTGTCACTGATACTATTGGAATCCATGCCCTCTTTGGGGCTTTTGTGATTGGTACCATTATGCCCAAAGAGGGTTCATTTTCTGTAGTGATGATTGAGAAGATAGAAGACCTGGTGTCTGGCCTTTTCCTGCCACTGTTTTTTGTGTCTAGTGGCTTGAAGACTAATGTGGCAACTATTAGTGGAGGACTTTCTTGGGCAATGTTGGTGCTTGTTATATTCAATGCTTGCTTTGGCAAGATTGTTGGCACAATAGTTGTGTCGTTAACGTGCAAGGTGCCTTCTCAAGAAGCCGTGGCACTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATAGTTCTCAACATTGGGAAGGACCGTAAGGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTGATGGCTGTATATAAACCAGCTCGCAGAGGAGCACCCTACAAGCACAGAACAATTCAGCGCAGAGATCCTGACACTGAGCTCCGAATGCTAGCTTGCTTCCACACCACCCGCAACATTCCCACGTTAATCAATCTCATAGAGTCTTCCCGCGGAATTCGAAAGAGAGGAAAGCTTTGCATCTATGCCATGCACTTGATGGAACTCTCAGAGCGATCTTCAGCAATCACAATGGTTCACAAGGCACGCAAGAATGGCATGCCCTTCTGGAACAAGAAACCGGATGACAAAGATCAAATGATCATTGCTTTTCAGGCTTATGAGAAACTAAGAAGTGTCAATGTGCGCCCCATGACAGCCATCTCTGCTCTCAATAGCATCCATGAGGATATTTGTACTAGTGCTCACCAAAAACGTGCAGCCATGATTATCCTCCCATTCCACAAACACCAACGTGTGGATGGATCAATGGAGTCACTAGGACATTCACTCCATGTGATGAATCAGCTTGTGCTAAGCCATGCTCCTTGCTCAGTGGGAATTTTGGTTGATCGAGGTCTTGGAGGGACAAGCCAAGTCCAAGCTAGTGATGTGTCTTATAAGGTTGTTGTACCCTTCTTTGGAGGACGTGATGATCGTGAAGCACTTTGTTATGGTATGAGAATGGCTGAGCACCCGGGGATTTTGCTCAATGTGGTTAAGTTTGTGCCCCCACCTGGGGCATCATTGGCCTTTGGTGCTAAATTGGTTGGGATGTCATCGAACAAGGACAAGAAAGCAATGGAAGTGGTTGGTGGCAGTTATTATGATGATAAACAACAAGATGATCAATTGTGGAGTGAGTTTTTAAGTGCATGCAACAACAACCAAGAGTCAATGAAGTATGAGCAAAAACTGGTGGCAAGCAAAGGTGATATTGAGGCAGCATTGAAGGAAATGAATAGGAGCAATCTAATATTGGTTGGTAGAATGCCATCAGTAGGACCTTTGGTTAGCAGAAGTGATTGTCCAGAACTTGGACCTGTTGGAAGCTACATGGCTTCTTCAGATTTCTCCACTGTTACATCAGTTATGGTAATTCAGCAATATAATCCTTCAACTGACATTCATCCACTAGTGATGGAGGAATTTGATTACCCAGATAAGCTAGAGCCAAACGCACCAAGGAGTTAA >Glyma13g17670.2 sequence type=CDS gene model=Glyma13g17670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGCTATTCGCCGTACTGGTCACAAGGCCTTAGCCATTGCCCTTTGTGGGATCACTGTGCCTTTTGTTCTTGGCATTGGCACTTCTTTTGCTCTTAGAGCCACCGTGTCCAAAGGTGCTGAGCCAGTTTCATTTCTTGTCTTCATGGGTGTTGCACTCTCAATCACTGCCTTTCCTGTCCTCGCTAGGATCCTAGCTGAGCTTAAACTCCTCACCACTGATGTTGGTCGCATAGCAATGTCAGCTGCAGCTGTGAATGATGTTGCAGCTTGGATTCTTCTTGCTCTTGCCATAGCCATTTCTGGTTCTAACGGATCACCCTTTGTTCCTCTTTGGGTCTTGCTCTCTGGTGTTGCTTTTGTTATCTTTGCTGTCTTTGCCATTAGGCCATTGCTTGTAGCTATGGCTAACCGTTCCCCTGAGGGTGAGCCAGTGAAGGAGGTGTACATATGCATCACATTGACACTGGTTTTGGCTTGTAGTTTTGTCACTGATACTATTGGAATCCATGCCCTCTTTGGGGCTTTTGTGATTGGTACCATTATGCCCAAAGAGGGTTCATTTTCTGTAGTGATGATTGAGAAGATAGAAGACCTGGTGTCTGGCCTTTTCCTGCCACTGTTTTTTGTGTCTAGTGGCTTGAAGACTAATGTGGCAACTATTAGTGGAGGACTTTCTTGGGCAATGTTGGTGCTTGTTATATTCAATGCTTGCTTTGGCAAGATTGTTGGCACAATAGTTGTGTCGTTAACGTGCAAGGTGCCTTCTCAAGAAGCCGTGGCACTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATAGTTCTCAACATTGGGAAGGACCGTAAGGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTGATGGCTGTATATAAACCAGCTCGCAGAGGAGCACCCTACAAGCACAGAACAATTCAGCGCAGAGATCCTGACACTGAGCTCCGAATGCTAGCTTGCTTCCACACCACCCGCAACATTCCCACGTTAATCAATCTCATAGAGTCTTCCCGCGGAATTCGAAAGAGAGGAAAGCTTTGCATCTATGCCATGCACTTGATGGAACTCTCAGAGCGATCTTCAGCAATCACAATGGTTCACAAGGCACGCAAGAATGGCATGCCCTTCTGGAACAAGAAACCGGATGACAAAGATCAAATGATCATTGCTTTTCAGGCTTATGAGAAACTAAGAAGTGTCAATGTGCGCCCCATGACAGCCATCTCTGCTCTCAATAGCATCCATGAGGATATTTGTACTAGTGCTCACCAAAAACGTGCAGCCATGATTATCCTCCCATTCCACAAACACCAACGTGTGGATGGATCAATGGAGTCACTAGGACATTCACTCCATGTGATGAATCAGCTTGTGCTAAGCCATGCTCCTTGCTCAGTGGGAATTTTGGTTGATCGAGGTCTTGGAGGGACAAGCCAAGTCCAAGCTAGTGATGTGTCTTATAAGGTTGTTGTACCCTTCTTTGGAGGACGTGATGATCGTGAAGCACTTTGTTATGGTATGAGAATGGCTGAGCACCCGGGGATTTTGCTCAATGTGGTTAAGTTTGTGCCCCCACCTGGGGCATCATTGGCCTTTGGTGCTAAATTGGTTGGGATGTCATCGAACAAGGACAAGAAAGCAATGGAAGTGGTTGGTGGCAGTTATTATGATGATAAACAACAAGATGATCAATTGTGGAGTGAGTTTTTAAGTGCATGCAACAACAACCAAGAGTCAATGAAGTATGAGCAAAAACTGGTGGCAAGCAAAGGTGATATTGAGGCAGCATTGAAGGAAATGAATAGGAGCAATCTAATATTGGTTGGTAGAATGCCATCAGTAGGACCTTTGGTTAGCAGAAGTGATTGTCCAGAACTTGGACCTGTTGGAAGCTACATGGCTTCTTCAGATTTCTCCACTGTTACATCAGTTATGGTAATTCAGCAATATAATCCTTCAACTGACATTCATCCACTAGTGATGGAGGAATTTGATTACCCAGATAAGCTAGAGCCAAACGCACCAAGGAGTTAA
>Glyma13g17670.1 sequence type=predicted peptide gene model=Glyma13g17670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATANNASCPAFMKATSNGAFQHENPLDYALPLLILQICLVVVFTRVIAFLCRPLRQPRVIAEIIGGILLGPSAIGRNEKFLSTVFPKKSITVLDTLGNVGLLFFLFLVGLELDMRAIRRTGHKALAIALCGITVPFVLGIGTSFALRATVSKGAEPVSFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIAISGSNGSPFVPLWVLLSGVAFVIFAVFAIRPLLVAMANRSPEGEPVKEVYICITLTLVLACSFVTDTIGIHALFGAFVIGTIMPKEGSFSVVMIEKIEDLVSGLFLPLFFVSSGLKTNVATISGGLSWAMLVLVIFNACFGKIVGTIVVSLTCKVPSQEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHRTIQRRDPDTELRMLACFHTTRNIPTLINLIESSRGIRKRGKLCIYAMHLMELSERSSAITMVHKARKNGMPFWNKKPDDKDQMIIAFQAYEKLRSVNVRPMTAISALNSIHEDICTSAHQKRAAMIILPFHKHQRVDGSMESLGHSLHVMNQLVLSHAPCSVGILVDRGLGGTSQVQASDVSYKVVVPFFGGRDDREALCYGMRMAEHPGILLNVVKFVPPPGASLAFGAKLVGMSSNKDKKAMEVVGGSYYDDKQQDDQLWSEFLSACNNNQESMKYEQKLVASKGDIEAALKEMNRSNLILVGRMPSVGPLVSRSDCPELGPVGSYMASSDFSTVTSVMVIQQYNPSTDIHPLVMEEFDYPDKLEPNAPRS* >Glyma13g17670.2 sequence type=predicted peptide gene model=Glyma13g17670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRAIRRTGHKALAIALCGITVPFVLGIGTSFALRATVSKGAEPVSFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIAISGSNGSPFVPLWVLLSGVAFVIFAVFAIRPLLVAMANRSPEGEPVKEVYICITLTLVLACSFVTDTIGIHALFGAFVIGTIMPKEGSFSVVMIEKIEDLVSGLFLPLFFVSSGLKTNVATISGGLSWAMLVLVIFNACFGKIVGTIVVSLTCKVPSQEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQAFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHRTIQRRDPDTELRMLACFHTTRNIPTLINLIESSRGIRKRGKLCIYAMHLMELSERSSAITMVHKARKNGMPFWNKKPDDKDQMIIAFQAYEKLRSVNVRPMTAISALNSIHEDICTSAHQKRAAMIILPFHKHQRVDGSMESLGHSLHVMNQLVLSHAPCSVGILVDRGLGGTSQVQASDVSYKVVVPFFGGRDDREALCYGMRMAEHPGILLNVVKFVPPPGASLAFGAKLVGMSSNKDKKAMEVVGGSYYDDKQQDDQLWSEFLSACNNNQESMKYEQKLVASKGDIEAALKEMNRSNLILVGRMPSVGPLVSRSDCPELGPVGSYMASSDFSTVTSVMVIQQYNPSTDIHPLVMEEFDYPDKLEPNAPRS*
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