Report for Sequence Feature Glyma13g17660
Feature Type: gene_model
Chromosome: Gm13
Start: 21413838
stop: 21416580
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g17660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G43520 AT
Annotation by Michelle Graham. TAIR10: Transmembrane proteins 14C | chr3:15406088-15407699 FORWARD LENGTH=240
SoyBase E_val: 6.00E-45 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG4267
KOG
Predicted membrane protein
JGI ISS
PTHR12668 Panther
TRANSMEMBRANE PROTEIN 14, 15
JGI ISS
PF03647 PFAM
Transmembrane proteins 14C
JGI ISS
UniRef100_B9RR06 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 14, putative n=1 Tax=Ricinus communis RepID=B9RR06_RICCO
SoyBase E_val: 2.00E-51 ISS
UniRef100_I1LYC8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYC8_SOYBN
SoyBase E_val: 3.00E-154 ISS
Expression Patterns of Glyma13g17660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g17660
Paralog Evidence Comments
Glyma17g04830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g17660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g116300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g17660
Coding sequences of Glyma13g17660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g17660.1 sequence type=CDS gene model=Glyma13g17660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGAGTCTGTGGGTGTGGCTGGGTTCGGTGTTTCAGGCTCATTCTCTCTTACTAGGCCCACAATCTTTTCTCGATCTTCCAATAATATCTCTCTCTTTCGCTCTCAATCTCATTTCCCTGCTGCTGCATTCGGTTCCTTGACACGTTCCAACCCACACGTGCACGCCGCTGTCACTTCCGACTCCAAGGCCGCTACTTCGCTTGACCTAACTCAACCCGATCTCGATAATAGCGGCGGCGGTGCCAACGGTAACGGAGGCGGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGAAGGAGGAGGTGATAATAGCAAGGGCGAGGAAGGATCTGACGGTGACAAGAGGAAAATGGCTCTGTTAATGTCTCAGAAATTCACTCTAGCTTATGCTGCACTCGTCGGAGTGGGTGGTGTAATGGGTTATCTCAAGAGTGGCAGCAACAAGTCACTTTTGGCTGGGGGTTTGTCTGCATCACTGCTGTATTATGTTTATACTGAGCTACCTGGAAGCCCTGTTTTCGCATCATCTGTTGGCCTTGGCATATCTGCTGCACTTCTTGGGGTGATGGGTTCTCGTTTCAAGAAATCAGGAAAGGTCTTTCCAGCAGGTGTTGTGTCACTTGTGTCCCTCATAATGACTGGTGGTTACTTGCATGGAATTATGCGTAGTGCGCACTAA
Predicted protein sequences of Glyma13g17660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g17660.1 sequence type=predicted peptide gene model=Glyma13g17660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAESVGVAGFGVSGSFSLTRPTIFSRSSNNISLFRSQSHFPAAAFGSLTRSNPHVHAAVTSDSKAATSLDLTQPDLDNSGGGANGNGGGGGGGGGGGGGGEGGGDNSKGEEGSDGDKRKMALLMSQKFTLAYAALVGVGGVMGYLKSGSNKSLLAGGLSASLLYYVYTELPGSPVFASSVGLGISAALLGVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSAH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
