SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04690 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxamine 5'-phosphate oxidase family protein | chr2:1644628-1646179 FORWARD LENGTH=210 | SoyBase | E_val: 1.00E-85 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG3374 | KOG | Cellular repressor of transcription | JGI | ISS | |
| PTHR13343 | Panther | CREG1 PROTEIN | JGI | ISS | |
| UniRef100_G7L3A7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein CREG1 n=1 Tax=Medicago truncatula RepID=G7L3A7_MEDTR | SoyBase | E_val: 3.00E-112 | ISS |
| UniRef100_I1LYC6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYC6_SOYBN | SoyBase | E_val: 6.00E-147 | ISS |
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Glyma13g17650 not represented in the dataset |
Glyma13g17650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g04840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g116200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17650.2 sequence type=transcript gene model=Glyma13g17650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAGAAATCAATAAATAAAAAGTTAAAAGAGATAAAATGTATAAATATATAAAAATATTCTCTTTGAATTTTTTGTAAAGAGAAAATATGCATAGATAGAGAGGATTTGATTCGGCGCGTGTTGGGATAATCCAATATAATCTAGAGGGTGCAGAGTAGAGTAAAAAAGATAAAGATGATCGATATGAAATTGATGATGATGTTGCTGATGTGGGGCTCTGAATCCCAAGGCCGATTACTGTCTATCCCAACAAAACCTAACCCAGATGATGCTCCTGCCTCTGCTCGTTGGCTCGTCTCCCTCAATTTCTGGGGAGTCTTGAATACTATCTCATCTGATTTGGGTGGAGCTCCCTTTGGGAATGTGGTATCATATAGTGATGGACTACCTAACGAAAGCACTGGAATCCCATACTTTTACTTGACAACTCTAGACCCGACAGCAAGAAATGCACTGCAAGATGATAAAGCTTCATTCACGGTCAGTGAATACCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACTGGAAAGCTGAAATTGGTTGATGAAAAGTCCAAGGAAGCCGAATTTGCTCGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAAGACTGGCCTGAGGATCACAACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCCAAACCACTCACAGTGGAACAGTACTTACATCCCAAAGTGTGAGTTTTAGAACAGAAATACTATCCTTGCAAGGCAATGATATGACATGACATCCCCCACCCTAAAATGATAAGAAAAAGGGAAAGGGAAGGAAAGAAATTGCCACACCTGTTACCCCGAAATTATTCAAAAGCAATTACATGATTGCATCTTATGGCATTTATCTATTTCTCATTTTTATGTTTTGCTGATTTATTTTCCGTCCAATTATGGTTCTTAATCTACAGGAACAATGTTGGCCTCATTCTCTGAATGCTCTTTGAATTGCTACTCCTTTTGTGGGCTGTAAATGTACACATAGTGTGTTCTTGGAGAAATTGTAAATAGATGTATACCGTGTTTCAAATTGTGTATTCCTTCCAAGATACCCTTCGACCATGGTTATTTATTCCCGTATATGTTTGAAATCTGTATGTTTATGATATGTAACTATACACACTGATCTCGGGTTCTTGCCCACTGTGGGTATATGTATGAAACGATAGCAACCATTAAGTGAAATAAAAGGTAACAGAGAGCATTAATTGATTGCATGCAGTTGCTATGCTTATCACT
>Glyma13g17650.1 sequence type=CDS gene model=Glyma13g17650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGATATGAAATTGATGATGATGTTGCTGATGTGGGGCTCTGAATCCCAAGGCCGATTACTGTCTATCCCAACAAAACCTAACCCAGATGATGCTCCTGCCTCTGCTCGTTGGCTCGTCTCCCTCAATTTCTGGGGAGTCTTGAATACTATCTCATCTGATTTGGGTGGAGCTCCCTTTGGGAATGTGGTATCATATAGTGATGGACTACCTAACGAAAGCACTGGAATCCCATACTTTTACTTGACAACTCTAGACCCGACAGCAAGAAATGCACTGCAAGATGATAAAGCTTCATTCACGGTCAGTGAATACCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACTGGAAAGCTGAAATTGGTTGATGAAAAGTCCAAGGAAGCCGAATTTGCTCGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAAGACTGGCCTGAGGATCACAACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCCAAACCACTCACAGTGGAACAGTACTTACATCCCAAAGTGAACAATGTTGGCCTCATTCTCTGA >Glyma13g17650.2 sequence type=CDS gene model=Glyma13g17650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGATATGAAATTGATGATGATGTTGCTGATGTGGGGCTCTGAATCCCAAGGCCGATTACTGTCTATCCCAACAAAACCTAACCCAGATGATGCTCCTGCCTCTGCTCGTTGGCTCGTCTCCCTCAATTTCTGGGGAGTCTTGAATACTATCTCATCTGATTTGGGTGGAGCTCCCTTTGGGAATGTGGTATCATATAGTGATGGACTACCTAACGAAAGCACTGGAATCCCATACTTTTACTTGACAACTCTAGACCCGACAGCAAGAAATGCACTGCAAGATGATAAAGCTTCATTCACGGTCAGTGAATACCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACTGGAAAGCTGAAATTGGTTGATGAAAAGTCCAAGGAAGCCGAATTTGCTCGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAAGACTGGCCTGAGGATCACAACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCCAAACCACTCACAGTGGAACAGTACTTACATCCCAAAGTGTGA
>Glyma13g17650.1 sequence type=predicted peptide gene model=Glyma13g17650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIDMKLMMMLLMWGSESQGRLLSIPTKPNPDDAPASARWLVSLNFWGVLNTISSDLGGAPFGNVVSYSDGLPNESTGIPYFYLTTLDPTARNALQDDKASFTVSEYPLGTCGRRDPMNPTCSKISLTGKLKLVDEKSKEAEFARNALFSKHPEMKDWPEDHNFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKVNNVGLIL* >Glyma13g17650.2 sequence type=predicted peptide gene model=Glyma13g17650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIDMKLMMMLLMWGSESQGRLLSIPTKPNPDDAPASARWLVSLNFWGVLNTISSDLGGAPFGNVVSYSDGLPNESTGIPYFYLTTLDPTARNALQDDKASFTVSEYPLGTCGRRDPMNPTCSKISLTGKLKLVDEKSKEAEFARNALFSKHPEMKDWPEDHNFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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