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Report for Sequence Feature Glyma13g17620

Feature Type:gene_model
Chromosome:Gm13
Start:21392524
stop:21393036
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g17620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43430AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:15354758-15355261 REVERSE LENGTH=167 SoyBaseE_val: 8.00E-41ISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF31Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7JR49UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JR49_MEDTR SoyBaseE_val: 1.00E-66ISS
UniRef100_I1LYC2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYC2_SOYBN SoyBaseE_val: 2.00E-121ISS

Expression Patterns of Glyma13g17620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g17620 not represented in the dataset
Glyma13g17620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17620
ParalogEvidenceComments
Glyma17g04880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g115900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g17620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g17620
>Glyma13g17620.1   sequence type=CDS   gene model=Glyma13g17620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTCTACGCTGAAGACACTCTCTCAGGCTTGACAATAGGCCAGGCCATATACGAGGTAGCTCTGATGATTGCGGTTCTGAGATGGGTCTTGTGCTTGATCTTCAGAGTGATGAACGACAGAAGAAGAACAGAATCCGATGAGACCCCAGCCGCAGAAGCATGTTGTCAGAAGGAGTACAACAACACTCTTGTGCTGACGACGTTCGGAGAGATTAAGGAGAGGCTGCCGCAGACGGAGGAGACATGTGCGGTGTGCCTGAGCCAGCTGAGCGTGGAGGACGAGGTTAGGGAGCTGATGAACTGCTACCACGTGTTCCACAGAGAGTGCATAGAGAGATGGTTGGAGCACGAGCATGAGAATCACATCCCCACGTGTCCTCTCTGCAGGGCTCCTTTGCTGAGTTCTTGCTGCCACCACAGCTCCACCACTTGTGTCCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTATATCTCTTTGGGGATGATCTCTTGCCTTGTTAG
Predicted protein sequences of Glyma13g17620
>Glyma13g17620.1   sequence type=predicted peptide   gene model=Glyma13g17620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFYAEDTLSGLTIGQAIYEVALMIAVLRWVLCLIFRVMNDRRRTESDETPAAEACCQKEYNNTLVLTTFGEIKERLPQTEETCAVCLSQLSVEDEVRELMNCYHVFHRECIERWLEHEHENHIPTCPLCRAPLLSSCCHHSSTTCVPPPQPSWAVERLLYLFGDDLLPC*






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