Glyma13g17580 - SoyBase

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Report for Sequence Feature Glyma13g17580

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21349085
stop:	21359911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33150	AT	Annotation by Michelle Graham. TAIR10: lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme \| chr4:15985479-15991069 REVERSE LENGTH=1064	SoyBase	E_val: 0	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0019477	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-lysine catabolic process	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004753	GO-mf	Annotation by Michelle Graham. GO Molecular Function: saccharopine dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0047130	GO-mf	Annotation by Michelle Graham. GO Molecular Function: saccharopine dehydrogenase (NADP+, L-lysine-forming) activity	SoyBase	N/A	ISS
KOG0172	KOG	Lysine-ketoglutarate reductase/saccharopine dehydrogenase	JGI		ISS
PTHR11133	Panther	SACCHAROPINE DEHYDROGENASE	JGI		ISS
PTHR11133:SF3	Panther	AMINOADIPIC SEMIALDEHYDE SYNTHASE	JGI		ISS
PF01262	PFAM	Alanine dehydrogenase/PNT, C-terminal domain	JGI		ISS
PF03435	PFAM	Saccharopine dehydrogenase	JGI		ISS
PF04455	PFAM	LOR/SDH bifunctional enzyme conserved region	JGI		ISS
PF05222	PFAM	Alanine dehydrogenase/PNT, N-terminal domain	JGI		ISS
UniRef100_G7JS28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine-ketoglutarate reductase/saccharopine dehydrogenase n=2 Tax=Medicago truncatula RepID=G7JS28_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BF05	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BF05 related cluster n=1 Tax=unknown RepID=UPI000233BF05	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g17580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17580

Paralog	Evidence	Comments
Glyma17g04920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g115500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g17580

Limit To All Plant Sequences

>Glyma13g17580.2   sequence type=CDS   gene model=Glyma13g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGGAACGGGGTTGTTGGGATCTTGGCAGAATCTGTGAATAAATGGGAAAGAAGGGCACCTTTGACCCCATCACACTGTGCTCGATTACTCCATGGTGGGACAGGTGTTTCTAGGATCATTGTGCAGCCTTCCACTAAGCGAATTCACCATGATGCTCTCTATGAAGAAGTTGGTGCTGAAATATCACAAGACTTGTCACAATGTGGTCTCATCCTTGGCATTAAGCAACCAAAGCTGGAGATGATATTACCAGATAGAGCTTATGCCTTCTTCTCACATACACATAAAGCACAGAAAGAAAACATGCCTTTGCTGGATAAGATTCTAGCTGAGAGGGCATCGTTATATGACTATGAATTAATTGTTGGGGACAATGGGAAAAGATTACTTGCATTTGGAAAATTTGCTGGTAGAGCTGGAATGATTGACTTTTTGCGCGGATTAGGACAACGGTTTTTAAGTCTTGGATATTCAACACCTTTCTTGTCACTTGGATCATCTTACATGTATCCTTCCCTGGCTGCTGCTAAGGCTGCTGTGATTTCTGTTGGTGAAGAAATTGCGACCCAGGGATTGCCATTGGGGATTTGTCCCCTGGTTTTTGTATTTACTGGTTCAGGAAATGTTTGTTCTGGTGCACAAGAGATATTTAAGCTTCTTCCTCATACCTTTGTAGATCCATCTAAACTACGCGATCTACATAGAACGGACAAAGATCAACCAAGGCATGCTTCAAAAAGAGTTTTCCAAGTTTATGGTTGTGTTGTGACTGCCCAAGACATGGTTGAACCCAAAGATCACGTGATAGTGTTTGACAAAGCAGACTACTATTCACATCCTGAGCATTACAATCCCACTTTCCATGAAAAAATAGCACCATATGCATCTGTTATTGTCAATTGCATGTATTGGGAGAAAAGATTTCCTCAATTGCTGAGCTATAAGCAGATGCAAGACTTAATGAGCCAGGGGTGCCCCCTTGTTGGAATAGCAGACATAACGTGTGATATAGGGGGTTCAATTGAGTTTGTTAACCGTGCTACATCAATTGATTCACCCTTTTTCAGATATGATCCCTTAACAAATTCCTACCATGATGATATGGAGGGGAATGGTGTGATATGCTTAGCTGTTGACATTCTTCCAACAGAATTTGCAAAGGAGGCTTCCCAACATTTTGGAAACATACTTTCCCAATTTGTCATAAATTTGGCTTCTGCTACAGACATTACAAAGTTGCCTGCTCACTTAAGGAGAGCTTGCATAGCCAATAAAGGAGTGCTAACCTCCTTATATGATTATATCCCACGCATGCGGAGTTCTGATTCAGAGGAAGTATCAGAAAACGCAGAAAATTCTCTATCTAACAAAAGGAAGTACAATATATCGGTGTCTCTGAGTGGTCACTTATTTGATCAGTTTCTGATAAATGAGGCCTTAGATATTATTGAAGCTGCAGGAGGCTCCTTCCACTTAGTCAACTGCCATGTCGGTCAGAGCGTTGAAGCTGTATCATTCTCTGAACTTGAAGTTGGTGCAGATGACAGGGCTGTTCTGGATCAAATCATTGATTCTTTAACTGCTATTGCTAATCCAACTGAAAATGATAGATTTTCAAATCAAGATTCAAGTAAAATTTCACTTAAGCTTGGTAAAGTCGAAGAGAATGGCATAGAGAAGGAGTCTGATCCCAGAAAGAAGGCTGCGGTTTTAATTCTTGGTGCTGGTCGGGTCTGTCAACCAGCTGCCGAAATGCTTTCATCATTTGGAAGGCCATCATCGAGCCAATGGTATAAAACATTGTTGGAAGATGATTTTGAATGTCAAATTGATATAGAAATCATTGTGGGATCTCTGTACCTGAAGGATGCAGAGCAGACTGTAGAGGGCATTCCAAATGTAACCGGAGTTCAGCTTGATGTGATGGATCATGCCAATTTGTGTAAGTACATTGCACAGGTTAACGTTGTTATAAGTTTGCTGCCCCCAAGTTGTCATATTATCGTAGCGAATGCTTGCATTGAGCTGAAAAAACATCTTGTCACTGCTAGCTATGTTGATAGCTCCATGTCAATGCTAAATGATAAGGCTAAGGATGCTGGCATAACAATTCTGGGAGAGATGGGCTTGGACCCAGGAATTGATCATATGATGGCAATGAAGATGATCAACCAAGCACATGTGCGGAAGGGGAAAATAAAGTCTTTCACTTCTTATTGTGGTGGACTTCCATCTCCTGAAGCTGCTAACAATCCATTAGCATATAAATTCAGTTGGAATCCTGCAGGAGCAATCCGAGCTGGGCGTAATCCTGCCACCTACAAATGGGGTGGTGAAACTGTACATATTGATGGGAACGATCTTTATGATTCTGCTACAAGACTAAGGCTACCGGACCTTCCTGCTTTTGCTTTGGAATGTCTCCCAAATCGCAATTCATTACTTTTAAGGGATTTGTATGGAATAACTGAAGCATCGACCATTTTCCGTGGAACCCTCCGCTATGAAGGATTTAGTGAGATCATGGGGACACTGTCTAGGATTGGCTTATTTAACAATGAAGCTCATTCGTTGCTAATGAATGAACAGAGACAAACTTTCAGAAAATTCTTATTTGAACTTCTCAAAGTTGTTAGCGATAATCCAGATGGACCATTGATAGGAGAGAATGACATCATGGAGCATATATTAACACAAGGGCACTGCAAAGATCAAAGAACTGCAATGAAGACAGCAAAAACAATCATATTCTTGGGACTTCTTGGCGAAACAGAAATCCCTGCTTCCTGCAAGAGTGCTTTTGATGTTGTTTGTTTCCGCATGGAGGAGAGGTTATCATACACCAGCACAGAAAAGGATATGGTGCTTTTGCACCATGAACTGGAAATAGAATACCCAGATAGCCAAATTACAGAGAAGCATAGAGCTACTTTACTTGAATTTGGGAAGACTCTTAATGGAAAAACCACAACTGCCATGGCCCTTACTGTTGGCATTCCAGCTGCTGTTGGAGCTTTGCTCTTATTGACAAACAAAATTCAGACAAGAGGAGTCTTAAGGCCTATCGAACCTGAAGTATACACTCCAGCACTGGATATTATAGAAGCTTATGGCATCAAGTTGATAGAGACGACCGAGTAA

Predicted protein sequences of Glyma13g17580

Limit To All Plant Sequences

>Glyma13g17580.2   sequence type=predicted peptide   gene model=Glyma13g17580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGNGVVGILAESVNKWERRAPLTPSHCARLLHGGTGVSRIIVQPSTKRIHHDALYEEVGAEISQDLSQCGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASLYDYELIVGDNGKRLLAFGKFAGRAGMIDFLRGLGQRFLSLGYSTPFLSLGSSYMYPSLAAAKAAVISVGEEIATQGLPLGICPLVFVFTGSGNVCSGAQEIFKLLPHTFVDPSKLRDLHRTDKDQPRHASKRVFQVYGCVVTAQDMVEPKDHVIVFDKADYYSHPEHYNPTFHEKIAPYASVIVNCMYWEKRFPQLLSYKQMQDLMSQGCPLVGIADITCDIGGSIEFVNRATSIDSPFFRYDPLTNSYHDDMEGNGVICLAVDILPTEFAKEASQHFGNILSQFVINLASATDITKLPAHLRRACIANKGVLTSLYDYIPRMRSSDSEEVSENAENSLSNKRKYNISVSLSGHLFDQFLINEALDIIEAAGGSFHLVNCHVGQSVEAVSFSELEVGADDRAVLDQIIDSLTAIANPTENDRFSNQDSSKISLKLGKVEENGIEKESDPRKKAAVLILGAGRVCQPAAEMLSSFGRPSSSQWYKTLLEDDFECQIDIEIIVGSLYLKDAEQTVEGIPNVTGVQLDVMDHANLCKYIAQVNVVISLLPPSCHIIVANACIELKKHLVTASYVDSSMSMLNDKAKDAGITILGEMGLDPGIDHMMAMKMINQAHVRKGKIKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIRAGRNPATYKWGGETVHIDGNDLYDSATRLRLPDLPAFALECLPNRNSLLLRDLYGITEASTIFRGTLRYEGFSEIMGTLSRIGLFNNEAHSLLMNEQRQTFRKFLFELLKVVSDNPDGPLIGENDIMEHILTQGHCKDQRTAMKTAKTIIFLGLLGETEIPASCKSAFDVVCFRMEERLSYTSTEKDMVLLHHELEIEYPDSQITEKHRATLLEFGKTLNGKTTTAMALTVGIPAAVGALLLLTNKIQTRGVLRPIEPEVYTPALDIIEAYGIKLIETTE*

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