Glyma13g17450 - SoyBase

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Report for Sequence Feature Glyma13g17450

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21243332
stop:	21246171
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33250	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3K \| chr4:16039066-16040617 REVERSE LENGTH=226	SoyBase	E_val: 2.00E-124	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0006446	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005852	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0043022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribosome binding	SoyBase	N/A	ISS
KOG3252	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13022	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	JGI		ISS
PF03399	PFAM	SAC3/GANP/Nin1/mts3/eIF-3 p25 family	JGI		ISS
UniRef100_G7JS43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Medicago truncatula RepID=G7JS43_MEDTR	SoyBase	E_val: 5.00E-152	ISS
UniRef100_I1LYA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYA4_SOYBN	SoyBase	E_val: 6.00E-168	ISS

Expression Patterns of Glyma13g17450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g17450 not represented in the dataset	Glyma13g17450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17450

Paralog	Evidence	Comments
Glyma17g05030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g114300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g17450

Limit To All Plant Sequences

>Glyma13g17450.2   sequence type=transcript   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTATATTGTATTACATTACATTTCCGTTGCTCCACTCACTCAGCCTAAGTAGGGTTTTGCAGAGTGTCGCGTTTGTCGCATTCCATACGAGGCCGAAGCGAAGAGTGTTTGTAGGGTTTGCGTTGCGCATCGTTTGAGAGAGAGAGATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGTATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGTATGTTTGTTTTGTCCATTTGAAGCATTGATTCATTACTTAGTGGAATATTGTTTCATCTCCAGCTAAACCAAAATCCAGTGCATTTATTCCCTAATTCCTAGTTGAACTCATGTTTAAATGTGACTCATACATTAAGAATAAAACACTTCTAGACTCACCAGTTTAATCCTCTATTTATTGTTTAGGTGTTCAATGGTTCTTCTTGAAAACTTTGGCACCTTGTTATTTGCATTTTTCTCACTGTTTGTCAGAAACAAACGAGTCTAACTATTTGACTTGTGTTCTGGAGTCTCTTAGGAGCGGTTAGTTCTGTGAAATTTGTTATTGTTTTAATGACTTTCACTAACCTTTATTATCATTTATTCTCTGTTTTCATAGGCCATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAAAATCAAGTGGCCAACAATGGTTGGGTTATTGAGAAGAGCCAAGGTAGGGCTCAACTTATTGTCCTCCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAATGCCGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTGTTTCCTGAAGGAGATCATGCAAATATTATATCAGTTGGAGCAACATCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATTTTGTATTCCTGTCTGAAAATTAATTTGCTTCGCTATGCTTTATTATTCGGTGAACAGATTGCCTGCTCTCTTTACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTGCTAGGATAAAAATAGGAGGAAAGAAGAAATACAAAGTTGGAATAAGGAGTAGAGAAAGGTTCACTTGTATGCATATGGTATGTTACTGGGGCAAAATTGAACTCGAAACTTATGTCAACTAATCTCATGGATGTTGGTGGCTAAATTCTAAAACATGGCCTGAGTTATTTTTCTCTTTTATTTGTAGGGAGCCAACCGCGAGGTTAACCAGATTTTTGTCCCTCAAATTTAT

>Glyma13g17450.3   sequence type=transcript   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTATATTGTATTACATTACATTTCCGTTGCTCCACTCACTCAGCCTAAGTAGGGTTTTGCAGAGTGTCGCGTTTGTCGCATTCCATACGAGGCCGAAGCGAAGAGTGTTTGTAGGGTTTGCGTTGCGCATCGTTTGAGAGAGAGAGATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGCCATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAAAATCAAGTGGCCAACAATGGTTGGGTTATTGAGAAGAGCCAAGGTAGGGCTCAACTTATTGTCCTCCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAATGCCGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTGTTTCCTGAAGGAGATCATGCAAATATTATATCAGTTGGAGCAACATCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATTTTGTATTCCTGTCTGAAAATTAATTTGCTTCGCTATGCTTTATTATTCGGTGAACAGATTGCCTGCTCTCTTTACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTGCTAGGATAAAAATAGGAGGAAAGAAGAAATACAAAGTTGGAATAAGGAGTAGAGAAAGGTTCACTTGTATGCATATGGTATGTTACTGGGGCAAAATTGAACTCGAAACTTATGTCAACTAATCTCATGGATGTTGGTGGCTAAATTCTAAAACATGGCCTGAGTTATTTTTCTCTTTTATTTGTAGGGAGCCAACCGCGAGGTTAACCAGATTTTTGTCCCTCAAATTTAT

>Glyma13g17450.4   sequence type=transcript   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTATATTGTATTACATTACATTTCCGTTGCTCCACTCACTCAGCCTAAGTAGGGTTTTGCAGAGTGTCGCGTTTGTCGCATTCCATACGAGGCCGAAGCGAAGAGTGTTTGTAGGGTTTGCGTTGCGCATCGTTTGAGAGAGAGAGATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGTATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCCATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAAAATCAAGTGGCCAACAATGGTTGGGTTATTGAGAAGAGCCAAGGTAGGGCTCAACTTATTGTCCTCCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAATGCCGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTGTTTCCTGAAGGAGATCATGCAAATATTATATCAGTTGGAGCAACATCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATTTTGTATTCCTGTCTGAAAATTAATTTGCTTCGCTATGCTTTATTATTCGGTGAACAGATTGCCTGCTCTCTTTACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTGCTAGGATAAAAATAGGAGGAAAGAAGAAATACAAAGTTGGAATAAGGAGTAGAGAAAGGTTCACTTGTATGCATATGGTATGTTACTGGGGCAAAATTGAACTCGAAACTTATGTCAACTAATCTCATGGATGTTGGTGGCTAAATTCTAAAACATGGCCTGAGTTATTTTTCTCTTTTATTTGTAGGGAGCCAACCGCGAGGTTAACCAGATTTTTGTCCCTCAAATTTAT

Coding sequences of Glyma13g17450

Limit To All Plant Sequences

>Glyma13g17450.1   sequence type=CDS   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGTATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCCATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAAAATCAAGTGGCCAACAATGGTTGGGTTATTGAGAAGAGCCAAGGTAGGGCTCAACTTATTGTCCTCCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAATGCCGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA

>Glyma13g17450.2   sequence type=CDS   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGTATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGTATGTTTGTTTTGTCCATTTGAAGCATTGATTCATTACTTAGTGGAATATTGTTTCATCTCCAGCTAA

>Glyma13g17450.3   sequence type=CDS   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGCCATTAACATAG

>Glyma13g17450.4   sequence type=CDS   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGAAAAAGAGACAACAAAGGTAGCTTACGCAGTGGAGCAGCTTGTAGCCTTCAATCGATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTATAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAATTCAAGACTTTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCCGCAAAAAGTCGTCACATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGGTATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCCATTAACATAGAAGGTTTATCCTTGGACAAATTCCTTGAAAATCAAGTGGCCAACAATGGTTGGGTTATTGAGAAGAGCCAAGGTAGGGCTCAACTTATTGTCCTCCCTAGAAATGAATTTAATGACCCAGCTTTGAAGAAAAATGCCGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA

Predicted protein sequences of Glyma13g17450

Limit To All Plant Sequences

>Glyma13g17450.1   sequence type=predicted peptide   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGREKETTKVAYAVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFLENQVANNGWVIEKSQGRAQLIVLPRNEFNDPALKKNAADSVPLEHITRIFPILS*

>Glyma13g17450.2   sequence type=predicted peptide   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGREKETTKVAYAVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEVCLFCPFEALIHYLVEYCFISS*

>Glyma13g17450.3   sequence type=predicted peptide   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGREKETTKVAYAVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGPLT*

>Glyma13g17450.4   sequence type=predicted peptide   gene model=Glyma13g17450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGREKETTKVAYAVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFLENQVANNGWVIEKSQGRAQLIVLPRNEFNDPALKKNAADSVPLEHITRIFPILS*

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