Glyma13g17440 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g17440

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21235708
stop:	21242580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43210	AT	Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein \| chr3:15191429-15196021 FORWARD LENGTH=938	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0007112	GO-bp	Annotation by Michelle Graham. GO Biological Process: male meiosis cytokinesis	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009558	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac cellularization	SoyBase	N/A	ISS
GO:0010245	GO-bp	Annotation by Michelle Graham. GO Biological Process: radial microtubular system formation	SoyBase	N/A	ISS
GO:0048229	GO-bp	Annotation by Michelle Graham. GO Biological Process: gametophyte development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0242	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF323	Panther		JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF11995	PFAM	Domain of unknown function (DUF3490)	JGI		ISS
UniRef100_G7JS44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-like protein n=1 Tax=Medicago truncatula RepID=G7JS44_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LYA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g17440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17440

Paralog	Evidence	Comments
Glyma17g05042	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g114200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g17440

Limit To All Plant Sequences

>Glyma13g17440.1   sequence type=CDS   gene model=Glyma13g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGGAACACCTGTGGCGGTGGCTGCGGCAACGCCGAGGTCTAAGATACAGAGGAATGCTTCAGGTACGCCGGGTGGCCCCAAAGTTCGGGAGGAGAAAATTCGAGTCACGGTTCGGATGAGGCCGCTCAATACAAAGGAGCAAGCTATGTACGATCTAATTGCTTGGGATTGTTTGGATGAACACACTATTGTGTTCAAGAATCCAAACCAAGAGAGGCCTACAACACCATACACCTTCGATAAAGTTTTTGCACCTACGTGCTCAACTCATAAGGTTTATGAAGAAGGGGCTAAAGATGTTGCTTTATCAGCACTTTCTGGAATCAATGCAACAATATTTGCGTATGGGCAGACTAGCAGTGGTAAGACATTCACGATGAGAGGCGTCACTGAAAGTGCTATTAAAGACATCTACGACTACATTAAGAATACACCAGAAAGGGATTTTATTCTGAGAATCTCTGCTCTGGAAATCTATAATGAGACTGTCATAGACCTTCTGAAACGTGAATCTGGTCCTCTTCGGCTCTTGGATGATCCTGAGAAAGGGACTATTGTGGAAAAGCTGAATGAAGAAGTAGCTGAAGATCGTCAACATCTTAGGCGCTTAATTGGCATCTGCGAAGCTCAAAGGCAAGTGGGAGAAACTGCTTTAAATGATAAAAGCTCAAGATCACATCAAATAATCAGGCTGACTGTAGAAAGCAGCCTTCGTGAAAGTTCAGGTCACGTAAAGTCTTACATAGCAAGTTTGAATTTTGTGGATCTTGCTGGAAGTGAACGCATCTCTCAAACAAATACATGTGGAGCAAGAATGAAGGAAGGCAGCCACATCAACCGAAGTTTGTTGACACTTGCATCAGTCATCAGGAAGCTAAGTGGCGGAAAATGTGGTCACATACCATATAGAGACTCAAAATTGACACGAATATTGCAGTCTTCATTAGGAGGGAATGCTCGAACAGCGATTATCTGTACCATAAGTCCTTCCTTAAGTCATGTGGAGCAAACAAGAAATACACTAGCATTTGCTACCAGTGCAAAGGAAGTCATTAATACTGCCCGAGTTAATATGGTCGTTTCAAATAAGACACTAGTTAGACAGTTGCAAAAGGAAGTTGCGAGGCTTGAAGGGGAGTTACGAAGCCCTGACCTTTCTGTGAATTCATGTCTAAGGTCATTGCTAGCTGAAAAGGAGTTGAAAATTCAGCAGATGGAGAGGGATATGGAAGATCTGAGGCGACAGAGAGACCTTGCACAAACTCAACTTGATCTGGAAAGAAGAGTGAATAAAGTTCCAAAGGGATCAAACGATTGTGGGCCCTCTAGTCAAATAGTCAGATGTCTTTCTTTTCCTGAAGAGAACAAATCAGCTAATGGTAAACGTACGCCAGAGCGACGAGAGGCAGTGGGCAGGCAGGCAATGCTGAAGAATTTATTGGCTTCTCCTGATCCATCCATACTGGTTGGTGAAATCCGAAAGCTTGAGGATCGGCAGCTCCAGCTCTGTGAGGATGCAAATCGAGCTCTTGAAGTTCTGCACCAGGATTTTGCAACTCACAAACTTGGGAATCAAGAAACTGCTGAAACCATGTCGAAAGTACTATCTGAAATAAAAGACTTAGTAGCTGCCAGCTCTACTCCAGAAGAAATTGTGGCAGCAGATAAGGCCGACCTAATGGAAAAGATCACACAGTTGAAAAATCAAGGGAACACCATTGCATCTTTAGAAAGGAAGCTGGAGAATGTTCAAAAATCTATAGACAAGCTTGTGTCTGCTTTTAATGCAGAGGAGACTCCAGAAAACAAGACGACCCCTCTGAGAAGGAAGAAAATTCTTCCTTTCACATTAAGCAACAGTCCCAACATGCAGCATATAATACGTGCTCCTTGCTCGCCTCTCTCCTCTTCGCGTAAAGCAATGGAACATGACATTGAGAACAGGGCACCGGAAAACAACATTGGCATCTCTGGCAGTGATTCTTTTGCTAAGTTTCATAAAGATACTCCACGAAAGGATGATAAAAGTTGTGATTCTATTTTATCACGGGCAGGAAGCCCAGCTACAAGGAAATCAAAATCAGTGAATGTGATGAAGATTCAAAAGATGTTCAAGAATGCTGCGGAGGAGAACATTCGGAGCTTCAGAGTTTATGTTACCGAGTTAAAAGAGCTAGTGGCAAAACTGCATTACCAGAAGCAGCTACTGGTTTGCCAGGTTTTGGAACTGGAAGCAAACAAGTCATTAAATGAAGAAAAGGATACACCTGATCGGTCTCCCTTGCCATGGCATATACTATTTGATCAGCAGAGAAAGCAAATTATCATGTTATGGCATTTATGCCACATATCTCTTGTGCACCGGACACAGTTTTTTCTTCTGTTAGGAGGAGACCCTTCTGATCAGATATATATGGAAGTTGAACTTAGAAGATTGACTCGGTTAGAACAGCACCTGGCAGAGCTTGGGAATGCTAGTCCTGCACTTCTAGGTGATGAGCCTGCAGGCTCTGTTTCAGCAAGCATTAGAGCTCTGAAGCAAGAAAGGGAACATCTTGCTAGGAAGGTGAACACTAAACTTACAGCAGAGGAGAGGGAACTGCTTTATGCAAAATGGGAAGTTCCTCCAGTTGGAAAACAAAGGAGACTGCAATTTGTAAATAAATTGTGGACCGACCCTTATAACATGCAACATGTGCAAGAAAGTGCTGAAATTGTAGCAAAGCTCATTGATTTCAGTGTATCTGATGAAAACAGCAAGGATATGATTGAATTAAACTTTTCAAGCCCTTTTAATAAGAAAACATGGGCGGGCTGGAACTTTATATCAAATCTTCTAAATTTGTAA

Predicted protein sequences of Glyma13g17440

Limit To All Plant Sequences

>Glyma13g17440.1   sequence type=predicted peptide   gene model=Glyma13g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGTPVAVAAATPRSKIQRNASGTPGGPKVREEKIRVTVRMRPLNTKEQAMYDLIAWDCLDEHTIVFKNPNQERPTTPYTFDKVFAPTCSTHKVYEEGAKDVALSALSGINATIFAYGQTSSGKTFTMRGVTESAIKDIYDYIKNTPERDFILRISALEIYNETVIDLLKRESGPLRLLDDPEKGTIVEKLNEEVAEDRQHLRRLIGICEAQRQVGETALNDKSSRSHQIIRLTVESSLRESSGHVKSYIASLNFVDLAGSERISQTNTCGARMKEGSHINRSLLTLASVIRKLSGGKCGHIPYRDSKLTRILQSSLGGNARTAIICTISPSLSHVEQTRNTLAFATSAKEVINTARVNMVVSNKTLVRQLQKEVARLEGELRSPDLSVNSCLRSLLAEKELKIQQMERDMEDLRRQRDLAQTQLDLERRVNKVPKGSNDCGPSSQIVRCLSFPEENKSANGKRTPERREAVGRQAMLKNLLASPDPSILVGEIRKLEDRQLQLCEDANRALEVLHQDFATHKLGNQETAETMSKVLSEIKDLVAASSTPEEIVAADKADLMEKITQLKNQGNTIASLERKLENVQKSIDKLVSAFNAEETPENKTTPLRRKKILPFTLSNSPNMQHIIRAPCSPLSSSRKAMEHDIENRAPENNIGISGSDSFAKFHKDTPRKDDKSCDSILSRAGSPATRKSKSVNVMKIQKMFKNAAEENIRSFRVYVTELKELVAKLHYQKQLLVCQVLELEANKSLNEEKDTPDRSPLPWHILFDQQRKQIIMLWHLCHISLVHRTQFFLLLGGDPSDQIYMEVELRRLTRLEQHLAELGNASPALLGDEPAGSVSASIRALKQEREHLARKVNTKLTAEERELLYAKWEVPPVGKQRRLQFVNKLWTDPYNMQHVQESAEIVAKLIDFSVSDENSKDMIELNFSSPFNKKTWAGWNFISNLLNL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain