Glyma13g17370 - SoyBase

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Report for Sequence Feature Glyma13g17370

Feature Type:	gene_model
Chromosome:	Gm13
Start:	21132252
stop:	21136628
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g17370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21090	AT	Annotation by Michelle Graham. TAIR10: MITOCHONDRIAL FERREDOXIN 2 \| chr4:11256663-11258269 REVERSE LENGTH=197	SoyBase	E_val: 4.00E-84	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
GO:0051537	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding	SoyBase	N/A	ISS
KOG3309	KOG	Ferredoxin	JGI		ISS
PTHR23426	Panther	FERREDOXIN/ADRENODOXIN	JGI		ISS
PTHR23426:SF1	Panther	ADRENODOXIN	JGI		ISS
PF00111	PFAM	2Fe-2S iron-sulfur cluster binding domain	JGI		ISS
UniRef100_G7JI11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2Fe-2S ferredoxin n=1 Tax=Medicago truncatula RepID=G7JI11_MEDTR	SoyBase	E_val: 4.00E-106	ISS
UniRef100_I1LY98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY98_SOYBN	SoyBase	E_val: 3.00E-147	ISS

Expression Patterns of Glyma13g17370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g17370 not represented in the dataset	Glyma13g17370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g17370

Paralog	Evidence	Comments
Glyma17g05130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g17370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g113400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g17370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g17370

Limit To All Plant Sequences

>Glyma13g17370.4   sequence type=transcript   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGAGATTATTTGGTTAAATAGGTCAGCGGTCAGTTGTGGGCTTTTGGGCTTTGAGAGATTGGGCTTTTGAAGCTGATTTTACAACTCAAATCTTTCTCCCATCTTTCTCGCATGCTTTGCGGCTCTTCTGGTCACATTCTTCCTCGCCACCACGGCTTTTGTAACATCGGTTTCTTAAACCCCTAAAATCACTATGCTAAATTCCCGAGTAGTAGCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAAGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAACTAGAAGGAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACACTGACTCATTTGTTTTGGTTCAATGCAAAGAGTGTTGCTTTCAGTTTTGTACCCTCACCGATTTAGATAAATCGGCATTTATTGATCATATCATAGGCATTATTTTTGTATTGTCCGTGTTCACGGAGCACCTCTATATATCAATTTAGAGAGAGATCGATCATGTTGTAATTTTCGACGGGCTACATTTTTGCGTGTCAATAAATTACTTGTACTGTTTTATATTCTTGAACCAATAACGTGAACAAACACGTCCAAAAAATATAAATATATGAAAGGCAGAATGGAGGACAAGATTATTTGGGCCTTCTTGGATTCGAGAGTATTGATCCAAATCAAACCGAAGGTAGTTTTCCTGTGTATGTTAAGTTGCTACCCGATTTCGCTATTTATGTTTTACATTTGTCTATCACGGTCAGATTTTATTTCAAGTAATTTCTAACAAAAACTCAAGTAAAATTAATCGGTAAATATTATCATTTGTAATTAATTATGTAGTTGCTCGTTTTCTCGTAAATGTTGCCTTGTGTATCCTTTCATTACGAGTCGTTTGAGATCCTTGGAAAAGATGCCTAAAAGGAGAAATGCTGGGGAAACTGTCTCAAGGATATTGAATATAAAAGAAAATATAAAGGTATTTTTGCTGGTTTGTTTCTACCTTTTTGTTCTTTCGTTAGTCTTCTAAATAAAAATAACATGAAAAAAATGATATTATTATAATTGAGTGAAAATATAAGATATATCAACTAAAAATGG

>Glyma13g17370.5   sequence type=transcript   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGAGATTATTTGGTTAAATAGGTCAGCGGTCAGTTGTGGGCTTTTGGGCTTTGAGAGATTGGGCTTTTGAAGCTGATTTTACAACTCAAATCTTTCTCCCATCTTTCTCGCATGCTTTGCGGCTCTTCTGGTCACATTCTTCCTCGCCACCACGGCTTTTGTAACATCGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAACTAGAAGGAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACACTGACTCATTTGTTTTGGTTCAATGCAAAGAGTGTTGCTTTCAGTTTTGTACCCTCACCGATTTAGATAAATCGGCATTTATTGATCATATCATAGGCATTATTTTTGTATTGTCCGTGTTCACGGAGCACCTCTATATATCAATTTAGAGAGAGATCGATCATGTTGTAATTTTCGACGGGCTACATTTTTGCGTGTCAATAAATTACTTGTACTGTTTTATATTCTTGAACCAATAACGTGAACAAACACGTCCAAAAAATATAAATATATGAAAGGCAGAATGGAGGACAAGATTATTTGGGCCTTCTTGGATTCGAGAGTATTGATCCAAATCAAACCGAAGGTAGTTTTCCTGTGTATGTTAAGTTGCTACCCGATTTCGCTATTTATGTTTTACATTTGTCTATCACGGTCAGATTTTATTTCAAGTAATTTCTAACAAAAACTCAAGTAAAATTAATCGGTAAATATTATCATTTGTAATTAATTATGTAGTTGCTCGTTTTCTCGTAAATGTTGCCTTGTGTATCCTTTCATTACGAGTCGTTTGAGATCCTTGGAAAAGATGCCTAAAAGGAGAAATGCTGGGGAAACTGTCTCAAGGATATTGAATATAAAAGAAAATATAAAGGTATTTTTGCTGGTTTGTTTCTACCTTTTTGTTCTTTCGTTAGTCTTCTAAATAAAAATAACATGAAAAAAATGATATTATTATAATTGAGTGAAAATATAAGATATATCAACTAAAAATGG

Coding sequences of Glyma13g17370

Limit To All Plant Sequences

>Glyma13g17370.3   sequence type=CDS   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTCCCGAGTAGTAGCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAAGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAACTAGAAGGAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACACTGA

>Glyma13g17370.4   sequence type=CDS   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTCCCGAGTAGTAGCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAAGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAACTAGAAGGAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACACTGA

>Glyma13g17370.5   sequence type=CDS   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAACTAGAAGGAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACACTGA

Predicted protein sequences of Glyma13g17370

Limit To All Plant Sequences

>Glyma13g17370.3   sequence type=predicted peptide   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSRVVARVGASIVKHLCTRNCTSLRGVGYIRSARYHHNQPLFQQHSFTKLYKGAMIEKHNFLSTMTTNNTTEEGSEQEQTISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDVEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*

>Glyma13g17370.4   sequence type=predicted peptide   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSRVVARVGASIVKHLCTRNCTSLRGVGYIRSARYHHNQPLFQQHSFTKLYKGAMIEKHNFLSTMTTNNTTEEGSEQEQTISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDVEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*

>Glyma13g17370.5   sequence type=predicted peptide   gene model=Glyma13g17370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEKHNFLSTMTTNNTTEEGSEQEQTISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDVEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*

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