SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20710 | AT | Annotation by Michelle Graham. TAIR10: beta-galactosidase 7 | chr5:7010536-7013994 FORWARD LENGTH=826 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005990 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lactose catabolic process | SoyBase | N/A | ISS |
| GO:0019513 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase | SoyBase | N/A | ISS |
| GO:0019515 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| KOG0496 | KOG | Beta-galactosidase | JGI | ISS | |
| PTHR23421 | Panther | BETA-GALACTOSIDASE RELATED | JGI | ISS | |
| PTHR23421:SF35 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01301 | PFAM | Glycosyl hydrolases family 35 | JGI | ISS | |
| PF02140 | PFAM | Galactose binding lectin domain | JGI | ISS | |
| PF02837 | PFAM | Glycosyl hydrolases family 2, sugar binding domain | JGI | ISS | |
| UniRef100_I1LY82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Glycine max RepID=I1LY82_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C76E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C76E related cluster n=1 Tax=unknown RepID=UPI000233C76E | SoyBase | E_val: 0 | ISS |
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Glyma13g17240 not represented in the dataset |
Glyma13g17240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g05250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g112300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17240.1 sequence type=CDS gene model=Glyma13g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAACTTTCTCTCTCTGTCCGTCTGGTTTTGCTTTGTTATTTTGTCCTTCATCGGCTCCAATGCTGTTGAAGTCTCTCATGATGGAAGGGCTATCATAATTGATGGTAAGCGTAGAGTGCTCTTATCTGGATCAATCCATTATCCTAGAAGCACCCCTGAGATGTGGCCCGAGTTAATCCAAAAAGCCAAAGAAGGAGGATTAGATGCAATTGAAACATATGTTTTCTGGAATGCACATGAACCTTCACGTCGTGTGTATGATTTTTCTGGCAATAATGATATCATCAGATTTCTCAAGACCATTCAAGAGTCTGGACTTTATGGTGTTCTTCGCATTGGTCCATATGTTTGTGCCGAATGGAATTATGGAGGGATTCCTGTTTGGGTTCACAATCTACCTGATGTCGAGATTAGGACTGCCAATAGTGTGTACATGAATGAAATGCAAAATTTCACTACTTTGATCGTGGATATGGTAAAAAAAGAGAAACTTTTTGCTTCTCAAGGTGGTCCCATAATTCTTACTCAGATCGAAAATGAATATGGTAACGTAATTTCACATTATGGAGATGCTGGAAAAGCTTACATGAATTGGTGCGCGAACATGGCAGAGTCCTTGAACGTTGGGGTTCCATGGATCATGTGCCAGGAGTCCGATGCTCCTCAGTCTATGATCAATACTTGCAATGGTTTTTATTGTGACAACTTTGAACCTAATAATCCTAGCAGTCCTAAAATGTGGACCGAAAATTGGGTAGGCTGGTTCAAGAATTGGGGTGGCAGAGATCCACACAGAACTGCTGAAGATGTTGCTTTTGCTGTGGCTAGATTTTTCCAAACCGGAGGCACATTCCAAAATTATTATATGTATCATGGTGGCACTAACTTCGATAGAACAGCCGGGGGTCCATATATTACCACATCATATGATTATGATGCTCCTCTCGATGAATACGGCAACATTGCCCAACCAAAATGGGGTCACCTCAAAGAACTTCACAATGTTTTGAAGTCAATGGAGGAAACTCTTACTAGTGGGAACGTGTCCGAGACTGATTTTGGCAACTCTGTTAAGGCCACTATTTATGCCACAAATGGATCATCAAGCTGCTTCTTGAGCAGCACCAACACCACCACTGATGCCACTCTAACATTTAGAGGAAAGAACTATACCGTTCCAGCATGGTCTGTTAGCATTCTTCCTGATTGTGAGCACGAAGAGTATAACACTGCCAAGGTGAATGTGCAGACCTCTGTAATGGTTAAAGAAAATAGCAAGGCAGAAGAGGAGGCAACAGCGTTGAAGTGGGTGTGGAGATCAGAGAATATTGATAATGCTCTTCATGGTAAAAGTAATGTCTCTGCAAACAGACTTCTTGATCAAAAAGATGCGGCTAATGATGCTAGTGACTATCTTTGGTACATGACAAAACTTCATGTCAAGCACGATGATCCAGTTTGGGGTGAAAATATGACTCTTAGGATTAACAGTAGCGGCCATGTAATTCATGCATTCGTCAACGGAGAACATATTGGTTCCCACTGGGCCACATATGGTATTCACAACGATAAATTTGAGCCGAAGATTAAGTTGAAGCATGGAACGAATACTATAAGCTTGCTTAGTGTCACTGTTGGACTTCAGAACTACGGGGCATTCTTTGATACATGGCACGCCGGTCTTGTTGAGCCTATTGAGCTGGTCAGTGTAAAAGGTGATGAAACCATCATTAAGAATTTATCCTCAAACAAATGGTCATACAAGGTAGGGTTGCATGGTTGGGACCACAAACTCTTTAGTGATGACTCACCCTTCGCTGCTCCAAACAAATGGGAATCTGAGAAGTTACCCACAGACAGGATGTTGACTTGGTACAAGACTACTTTCAATGCTCCTCTGGGGACAGACCCTGTTGTGGTGGACTTGCAAGGAATGGGCAAAGGCTATGCTTGGGTGAATGGTCAAAACATTGGACGTATCTGGCCTAGTTACAATGCGGAAGAAGATGGTTGTAGTGATGAGCCTTGTGATTATCGTGGAGAATATACTGACTCAAAATGTGTTACAAATTGTGGGAAGCCAACACAAAGATGGTACCATGTCCCTCGCTCTTATCTTAAAGATGGTGCAAATAATTTGGTTTTGTTTGCGGAGTTGGGTGGGAACCCATCACAAGTGAATTTCCAAACCGTTGTTGTTGGCACTGTATGTGCAAATGCATACGAGAACAAGACCTTGGAGTTGTCTTGCCAAGGTCGTAAAATCTCCGCTATTAAGTTTGCAAGTTTTGGTGATCCAGAAGGAGTGTGTGGAGCATTCACCAATGGCAGTTGCGAGAGCAAGAGTAACGCACTGTCCATCGTGCAAAAGGCATGCGTTGGCAAGCAAGCATGTTCATTTGATGTTTCAGAGAAGACATTTGGTCCAACGGCTTGTGGAAATGTTGCTAAGAGACTTGCAGTGGAGGCAGTCTGTTAG
>Glyma13g17240.1 sequence type=predicted peptide gene model=Glyma13g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNFLSLSVWFCFVILSFIGSNAVEVSHDGRAIIIDGKRRVLLSGSIHYPRSTPEMWPELIQKAKEGGLDAIETYVFWNAHEPSRRVYDFSGNNDIIRFLKTIQESGLYGVLRIGPYVCAEWNYGGIPVWVHNLPDVEIRTANSVYMNEMQNFTTLIVDMVKKEKLFASQGGPIILTQIENEYGNVISHYGDAGKAYMNWCANMAESLNVGVPWIMCQESDAPQSMINTCNGFYCDNFEPNNPSSPKMWTENWVGWFKNWGGRDPHRTAEDVAFAVARFFQTGGTFQNYYMYHGGTNFDRTAGGPYITTSYDYDAPLDEYGNIAQPKWGHLKELHNVLKSMEETLTSGNVSETDFGNSVKATIYATNGSSSCFLSSTNTTTDATLTFRGKNYTVPAWSVSILPDCEHEEYNTAKVNVQTSVMVKENSKAEEEATALKWVWRSENIDNALHGKSNVSANRLLDQKDAANDASDYLWYMTKLHVKHDDPVWGENMTLRINSSGHVIHAFVNGEHIGSHWATYGIHNDKFEPKIKLKHGTNTISLLSVTVGLQNYGAFFDTWHAGLVEPIELVSVKGDETIIKNLSSNKWSYKVGLHGWDHKLFSDDSPFAAPNKWESEKLPTDRMLTWYKTTFNAPLGTDPVVVDLQGMGKGYAWVNGQNIGRIWPSYNAEEDGCSDEPCDYRGEYTDSKCVTNCGKPTQRWYHVPRSYLKDGANNLVLFAELGGNPSQVNFQTVVVGTVCANAYENKTLELSCQGRKISAIKFASFGDPEGVCGAFTNGSCESKSNALSIVQKACVGKQACSFDVSEKTFGPTACGNVAKRLAVEAVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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