SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19140 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). | chr1:6611026-6612414 | SoyBase | E_val: 4.00E-122 | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2969 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21427 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21427:SF2 | Panther | gb def: T29M8.1/T29M8.1 | JGI | ISS | |
| PF08511 | PFAM | COQ9 | JGI | ISS | |
| UniRef100_B9RR78 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinone biosynthesis protein COQ9, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9RR78_RICCO | SoyBase | E_val: 7.00E-123 | ISS |
| UniRef100_I1LY75 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY75_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g17150 not represented in the dataset |
Glyma13g17150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g05570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g111700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g17150.1 sequence type=CDS gene model=Glyma13g17150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATCGAACGGCGGCGAAGCGGTTGTTGTGCGGTGCAAGATACTACTATAATGGCAACGTTGGACTCCGATTCCGGCCTCCTCAGATATTTATACCCTCTTCTCGCTTTTCCACATCCGAGACTCAACCTTTACCCATTCCACACGCTACGGATCGTACCATTCCAGTCGTCGTCACCACCGAAACCGAAAACCCTAACTCTTCAGATTCGTCCGCTTCTTCTTCACCTTCATCTTCCTCAACAGCTGATGATGCCACAAAACCCAGGGCCAAGTATGAGGACCAACACACTCGCGTGCTTCAGGCCTCGCTCTCTTACGTCTTAAAGTTGGGGTGGACAGAAGCTGCGCTAGTTGCAGGAGCCAGGGATGTCGGTCTTTCGCCATCTATTGTTGGATCTTTTCCCAGGAAGGAAGCAGCACTGGTCGAGTATTTCATGGATGGCTGCTTACAAAGACTTGCTGATAAAATTGACTCAGATGAGAGTTTACAAAATTTGACACCAAGTGACTGCATCTCTAAGCTTATCAGATTTCGTTTAGAAATGCAAGCTCCATATATATCAACATGGCCTCAAGCTCTTAGCATCCAGGCACAACCTGTTAATGTTCCTACAAGTTTTAAGCAGAGGGCAGTGCTTGTGGATGAGATCTGGCATGCTGCTGGTGATAATGCCTCTGACATTGATTGGTATGCCAAGCGCACTATCCTTGGAGGAATATACTCAACAACTGAGATTTATATGCTGACAGATACCTCTCCTGATTTCCGTGATACATGGGCTTTCTTGGATGCTCGAGTTAAAGATGCCTTTGATTTAAAGAAAACCATTCAAGAGGCACAGTATTTGGCAGAAGCTGTCAGTACCGGGCTGGGAAACTCCTTTCAAGGGTTTGTCGGGAAAGTTTTCCAGAGATGA
>Glyma13g17150.1 sequence type=predicted peptide gene model=Glyma13g17150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYRTAAKRLLCGARYYYNGNVGLRFRPPQIFIPSSRFSTSETQPLPIPHATDRTIPVVVTTETENPNSSDSSASSSPSSSSTADDATKPRAKYEDQHTRVLQASLSYVLKLGWTEAALVAGARDVGLSPSIVGSFPRKEAALVEYFMDGCLQRLADKIDSDESLQNLTPSDCISKLIRFRLEMQAPYISTWPQALSIQAQPVNVPTSFKQRAVLVDEIWHAAGDNASDIDWYAKRTILGGIYSTTEIYMLTDTSPDFRDTWAFLDARVKDAFDLKKTIQEAQYLAEAVSTGLGNSFQGFVGKVFQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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