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Report for Sequence Feature Glyma13g17140

Feature Type:gene_model
Chromosome:Gm13
Start:20953006
stop:20956280
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g17140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19130AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | chr1:6609545-6610555 REVERSE LENGTH=192 SoyBaseE_val: 5.00E-91ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06172PFAM Cupin superfamily (DUF985) JGI ISS
UniRef100_I1LY74UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY74_SOYBN SoyBaseE_val: 2.00E-142ISS
UniRef100_Q9LMB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: F14D16.29 n=2 Tax=Arabidopsis thaliana RepID=Q9LMB4_ARATH SoyBaseE_val: 3.00E-85ISS

Expression Patterns of Glyma13g17140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g17140 not represented in the dataset
Glyma13g17140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g17140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g111600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g17140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g17140
>Glyma13g17140.1   sequence type=CDS   gene model=Glyma13g17140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTGAGGGCATCAGAGATAGCGAAGAAGTTGAATCTGCAACCTCACCCAGAAGGTGGGTTTTACGTGGAGACATTCCGAGACCATTCCGTCCAGCTTTCGACCTCTCAGCTCCCCCCCGAATACAAAGTGGATCGCCCTGTATCGACCTCCATCTATTTTCTCGTTCCTTCTGGGAGTGTGTCTCGCCTCCATCGCATACCCTGCGCCGAAACCTGGCATCATTACATCGGCGACCCTCTCACCGTAGTGGAATTGAATGAGAAAGATGGGAGCGTAAAATTCACTTGCCTTGGATCAGATCTGACTCAGAATCAGGTGCCGCAGTACACGGTGCCTCCCAACGTCTGGTTTGGCTCTTTTCCTACCAAGGACTTTACCTACTCTGCGGACGGGGTATTCGGAAGTGCTGAAGCTGAAGCTGAAGCTGAAGCTAGAGATAGTGAGAGGAACTACACTCTTGTAGGATGCACTTGTGCCCCTGCGTTTCAGTACCAGGACTTCGAGCTCGCTAAGCCTTCTTATCTCCTCGCTCGTTTTCCCCAATTCCACCCTCTCGTCACTGCTCTCACATTCCCCGAGTGA
Predicted protein sequences of Glyma13g17140
>Glyma13g17140.1   sequence type=predicted peptide   gene model=Glyma13g17140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRASEIAKKLNLQPHPEGGFYVETFRDHSVQLSTSQLPPEYKVDRPVSTSIYFLVPSGSVSRLHRIPCAETWHHYIGDPLTVVELNEKDGSVKFTCLGSDLTQNQVPQYTVPPNVWFGSFPTKDFTYSADGVFGSAEAEAEAEARDSERNYTLVGCTCAPAFQYQDFELAKPSYLLARFPQFHPLVTALTFPE*






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