Report for Sequence Feature Glyma13g17030
Feature Type: gene_model
Chromosome: Gm13
Start: 20851368
stop: 20854410
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g17030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G21940 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7249446-7250353 REVERSE LENGTH=264
SoyBase E_val: 6.00E-24 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_G7J8G5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MTD1 n=1 Tax=Medicago truncatula RepID=G7J8G5_MEDTR
SoyBase E_val: 2.00E-22 ISS
UniRef100_I1LY62 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY62_SOYBN
SoyBase E_val: 6.00E-167 ISS
Expression Patterns of Glyma13g17030
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g17030
Paralog Evidence Comments
Glyma17g05690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g17030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g110500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g17030
Coding sequences of Glyma13g17030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g17030.1 sequence type=CDS gene model=Glyma13g17030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGTTTGCTATGGAGAATAACGGAGGAGGAGTTACGATCGGACGGTCCTCCTTCGCCCACTGTGTCGCGATCTGTGATCGGGATTTTCCGGCGGATGATTCCGACTCCAGCTCCGACTCCTCCATCGGAAGGAACAGCACCTCGTCGGAAGATTCCTCCGACCGGGAAGACGCCGGCGAAGTTGAGGTTCAGAGCTCCTTCAAAGGCCCTTTAGATACCATCAACGATCTAGAGGAAGATTTACCCGTCAAGAAAGGCATATCCAAGTTCTATAGTGGCAAATCCAGGTCCTTCACAAGCTTAGCAGATGCTGCAGCTGCAAGTTCTATGGAAGAGATTGTGAAGCCAGAGGATCCTTATGCCAAGAAACGCAAGAACTTAATAGCTCGTAACTCCTCAATTGAGAGGAGTCGCAGTTGCGCAAATATTGGTGGAATATCAAAGCGACCCACAAACATAGGTCGAGGAGGAACATCTTGTCTCACTCTGAGCTGTAGTGAAGAGGGTAGTAGCTCCACTTCAATATCTCCTCCATGCCCTCTTCCTCCTCTTCATCCGCGCGTCATTAATAGGTCATCGCTGCCTCAACCGTCTTCTTCAACCGCACGAAATCCTCCTTGGAGGTCATATTCCTGGACTGATCTGCACTCTGTTGCTGAGGCTCATGATATATCTGGTTTGGCTATTTGTAGTGGAAACTAA
Predicted protein sequences of Glyma13g17030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g17030.1 sequence type=predicted peptide gene model=Glyma13g17030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPFAMENNGGGVTIGRSSFAHCVAICDRDFPADDSDSSSDSSIGRNSTSSEDSSDREDAGEVEVQSSFKGPLDTINDLEEDLPVKKGISKFYSGKSRSFTSLADAAAASSMEEIVKPEDPYAKKRKNLIARNSSIERSRSCANIGGISKRPTNIGRGGTSCLTLSCSEEGSSSTSISPPCPLPPLHPRVINRSSLPQPSSSTARNPPWRSYSWTDLHSVAEAHDISGLAICSGN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
