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Report for Sequence Feature Glyma13g16983

Feature Type:gene_model
Chromosome:Gm13
Start:20826574
stop:20830569
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16983
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G06040AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762 SoyBaseE_val: 3.00E-120ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF2Panther gb def: Hypothetical protein At2g06040 JGI ISS
UniRef100_B9RRB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rad7, putative n=1 Tax=Ricinus communis RepID=B9RRB4_RICCO SoyBaseE_val: 7.00E-131ISS
UniRef100_I1MSA9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSA9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g16983
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g16983 not represented in the dataset
Glyma13g16983 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16983
ParalogEvidenceComments
Glyma17g05740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16983 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g16983
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g16983
>Glyma13g16983.1   sequence type=CDS   gene model=Glyma13g16983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACCAAACACATCCTAAATTCTCCGGATTCCGATATTGACACTTTTCTCGAACAACCAAACCCTCAATTGTTGCCCTCTCTGCCTCACTACGGATCCAACCCCAAGAGAGGAATTGACCCCACCGCCGTTGATTATTTCGACGCCGCCATATCCTTCAAGCGTGGTAGAATTAACAATGCCACCCACGACGTTGATGATGGTCAACACGCCACCTTTGAACTTCAAAACCCTACTTCTCTCTCCCTGGATCCTGGAGGACCCAGCGCTATTAATAATGATAATCACAGAGGAGAAGAAAAGCAAGGGAAACGGCCACTGTTTCAAATTGATTTTATATCTAAGGCTCTTCTTGAAGCTGAATTAGGTTTAGCGCAGAATTCTGACGATAAGGCCGACATGGAGCCTGAGAACGAGAATGTTGATATGCGCTATGTACCAATGAGCTTTTACCGAAGGAACAGGAACATGGAACGTTTCCGTATGATAGCGAAGAAAAACGCGACTCACTATGCTCGATTCGACTCGGAGGTTGAAGATGAAGGGACATCATCATATCTTAACCCTCGAGGAATTGTTGACGGTTCCGAAACTCCATTTTCGGACGCGATGAATCAAAAAGGGGGGGAGAAGGGCTTTTTTTTTGTGCCCTCTCTTCAAGAACTCTGCCTTGAAATGCTTGCGGATAATGCTGATGCAATGGTTTCGCTTGAGGGTGTACCGGATGAGCTGATACGCAAGCTTTGCAACCTGCTCTGTGACTCAAGAAAGATGAACACCCGATTTCTTGAGCTTCTTCTCAGTGGCTCTCCCACGGAGATTCGGTTAAAAGACTGTTCTTGGTTGACGGAGGAGCAGTTTGCCAAATATTTTCAAACGTGTGACACTACAAGATTGGAGCTTGACCAGTGTGGAAGGTGTATACCTGATTATGCATTACTTGGTACTTTGAGACAGTCACCAAGGTGGTTGCCAAAGTTAATTACACTGTCCCTCAGTGATAAGGGGTTGCATGTGCTAGCTTCTTCTGCCCCAGCACTGAGATCCATTAATCTAAGCCAGTGCTCCCTTCTCTCATCTGCCAGTATTAATATTTTGGCTGATTCATTGGGATCCCTTCTGAAAGAGTTATATCTTGATGATTGTCTTATGATTGATGCTGCACAAATTGTGCCAGGACTGAAGAAACTTAAACATTTAGAGGTGTTGTCATTGGCTGGCATTCAAACTGTCTCTGATGAATTTATCAAGGACTACATCATTGAATGTGGTCACAACATGAAGGAGCTTATTTTAAAAGACTGTCGAAAATTGACTGATGCATCGATTAAAGGCGTTGCTGAACACTGTCCTGGATTGTGTGCACTTGATCTTATGAACTTGGACAAATTGACAGATTTATCCTTAGGATATCTTACAAATAGTTGTCGAGCACTTCATACATTGAAGCTCTGCCACAATCCATTCAGTGATGAAGCAATTGCTGCCTTCTTGGAGATTACTGGAGTGTCCTTGAAAGAACTTTCACTTAATAATATTAAGAAGGTGACAGATGTTTTTCTGAATGGGCACTCAAACCCAGAGATTCAGATCCTTGGATTGAAGATGTCTCCTTTATTGCAAAATGTCAAAGTGCCCGAACCCTGTCAAGGTCCTCTGCGTTATTCACCAGTTTCAGTAGATTTGGTATAA
Predicted protein sequences of Glyma13g16983
>Glyma13g16983.1   sequence type=predicted peptide   gene model=Glyma13g16983   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTKHILNSPDSDIDTFLEQPNPQLLPSLPHYGSNPKRGIDPTAVDYFDAAISFKRGRINNATHDVDDGQHATFELQNPTSLSLDPGGPSAINNDNHRGEEKQGKRPLFQIDFISKALLEAELGLAQNSDDKADMEPENENVDMRYVPMSFYRRNRNMERFRMIAKKNATHYARFDSEVEDEGTSSYLNPRGIVDGSETPFSDAMNQKGGEKGFFFVPSLQELCLEMLADNADAMVSLEGVPDELIRKLCNLLCDSRKMNTRFLELLLSGSPTEIRLKDCSWLTEEQFAKYFQTCDTTRLELDQCGRCIPDYALLGTLRQSPRWLPKLITLSLSDKGLHVLASSAPALRSINLSQCSLLSSASINILADSLGSLLKELYLDDCLMIDAAQIVPGLKKLKHLEVLSLAGIQTVSDEFIKDYIIECGHNMKELILKDCRKLTDASIKGVAEHCPGLCALDLMNLDKLTDLSLGYLTNSCRALHTLKLCHNPFSDEAIAAFLEITGVSLKELSLNNIKKVTDVFLNGHSNPEIQILGLKMSPLLQNVKVPEPCQGPLRYSPVSVDLV*






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