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Report for Sequence Feature Glyma13g16924

Feature Type:gene_model
Chromosome:Gm13
Start:20777152
stop:20779829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16924
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13960AT Annotation by Michelle Graham. TAIR10: growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397 SoyBaseE_val: 4.00E-51ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016818GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides SoyBaseN/AISS
PF08879PFAM WRC JGI ISS
PF08880PFAM QLQ JGI ISS
UniRef100_B6TZ77UniRef Annotation by Michelle Graham. Most informative UniRef hit: AtGRF5 n=1 Tax=Zea mays RepID=B6TZ77_MAIZE SoyBaseE_val: 9.00E-54ISS
UniRef100_UPI000233C5F2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C5F2 related cluster n=1 Tax=unknown RepID=UPI000233C5F2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g16924
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g16924 not represented in the dataset
Glyma13g16924 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16924
ParalogEvidenceComments
Glyma17g05800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16924 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g109500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g16924
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g16924
>Glyma13g16924.2   sequence type=transcript   gene model=Glyma13g16924   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGCAGAAGCAGTAGCAACAGAGAGGTGCAGTCATAATACTAATAGGAGCTGAGAGAGAGAGAGAGAGAAAGAGTGTGTGCATTTGTGCATTGGCATGCAGCTATGTAATCAGAACCATTAGTTTATTACTGTAACACAATGGTCCCTGAAATAAATATACCTACTCTACTCCAAGGGTCCAAAGTAACAAACAAGAAGCAATAACACTCAAAACTCCTCTCCTCACATTTCTCCCTGAGCCTAAGCCTGAAACCTGTCCTCTCTTTAACTTACTACTGCACTGTGAGGTGTGTCTGAAATAGCTAGCTTCTGTTTCATTTGTTACTATCACCCACCAGCACCAGCCTTTGTGCTCTTTGATTCCTTTTTAGTTTTTTCCCTGTTCTTTCCCTTTCCCTTTCCCCTCAGCTCGATAATGAATGGAAGGAACGTTAACACAAACAGGTTCCCTTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTATTGCCTCACCACCCTCAACACTTTGGATGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAGTGGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGCACATGCACTCTCCCCAACCACTCATTCTCTCTCTCATGACACTTACCATCATCATCATCATCACCCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATCATTCTTCGAGGCCCTCTTCCGGTGCTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTGAAGGAGGAGGTGGACGAGCATGCCTTCTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAACTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAATGGCAACAACTCAAAACAGCCACAACAAGATCAAGGTTGCTACATATCAGGCAGTGATGTCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCCTAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCAACTTCTACTCATGATTTTGCAACTTTCAATTCAACAACCCAACGAGATGGTTGAGTTTAGCTTTCAACAGTGGGGTCCTTCAGTCCTTGTACTTGAATCAAAGGCCAAAAATGTACTTACATGGTGGGGTTCACATCATGTTGTGATTTGTGAGATCTCTCTTTAATTGCTCCCCCTTTTTCCATCTGTTTTTAAATGTTGTTGAAGCTGATTTGTGTTTCCATGGAGGGATCCAATGTGTTTGTGTGCTATTTGCTTTCAATGTTGTTTCTACTCTCTCTCTCTCATTTTGTGTTCTTTGTGGTTTGAGCTAACACTCAAAGACACGTCCTTTTTTGCTTGTTCATCATTCTCTGTTGAGTAGTACAATATTATTTTGGATGCTTTTTTATGGTCCCAGGGAAAGGATTTGCTTGTTTGTCACT
Coding sequences of Glyma13g16924
>Glyma13g16924.1   sequence type=CDS   gene model=Glyma13g16924   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGAAGGAACGTTAACACAAACAGGTTCCCTTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTATTGCCTCACCACCCTCAACACTTTGGATGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAGTGGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGCACATGCACTCTCCCCAACCACTCATTCTCTCTCTCATGACACTTACCATCATCATCATCATCACCCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATCATTCTTCGAGGCCCTCTTCCGGTGCTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACACTGACTGCAGGAACAGGTATGTGTATGGACTGAAGGAGGAGGTGGACGAGCATGCCTTCTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAACTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAATGGCAACAACTCAAAACAGCCACAACAAGATCAAGGTTGCTACATATCAGGCAGTGATGTCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCCTAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCAACTTCTACTCATGATTTTGCAACTTTCAATTCAACAACCCAACGAGATGGTTGA

>Glyma13g16924.2   sequence type=CDS   gene model=Glyma13g16924   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGAAGGAACGTTAACACAAACAGGTTCCCTTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTATTGCCTCACCACCCTCAACACTTTGGATGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAGTGGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGCACATGCACTCTCCCCAACCACTCATTCTCTCTCTCATGACACTTACCATCATCATCATCATCACCCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATCATTCTTCGAGGCCCTCTTCCGGTGCTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTGAAGGAGGAGGTGGACGAGCATGCCTTCTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAACTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAATGGCAACAACTCAAAACAGCCACAACAAGATCAAGGTTGCTACATATCAGGCAGTGATGTCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCCTAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCAACTTCTACTCATGATTTTGCAACTTTCAATTCAACAACCCAACGAGATGGTTGA
Predicted protein sequences of Glyma13g16924
>Glyma13g16924.1   sequence type=predicted peptide   gene model=Glyma13g16924   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGRNVNTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPHHPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAAVATNTDASTPTTILSITKNSPAHALSPTTHSLSHDTYHHHHHHPHPQQHSSHSFLYHHSSRPSSGAALSFQDNSAPLFLDTASCSQNNNNTDCRNRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRNCSGLSNDNNEYSYLQLQSLNGNNSKQPQQDQGCYISGSDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFNSTTQRDG*

>Glyma13g16924.2   sequence type=predicted peptide   gene model=Glyma13g16924   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGRNVNTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPHHPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAAVATNTDASTPTTILSITKNSPAHALSPTTHSLSHDTYHHHHHHPHPQQHSSHSFLYHHSSRPSSGAALSFQDNSAPLFLDTASCSQNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRNCSGLSNDNNEYSYLQLQSLNGNNSKQPQQDQGCYISGSDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFNSTTQRDG*






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