SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09380 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272 | SoyBase | E_val: 5.00E-69 | ISS |
| GO:0006383 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase III promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005666 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase III complex | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG3122 | KOG | DNA-directed RNA polymerase III subunit | JGI | ISS | |
| PTHR13408 | Panther | DNA-DIRECTED RNA POLYMERASE III | JGI | ISS | |
| PF05132 | PFAM | RNA polymerase III RPC4 | JGI | ISS | |
| UniRef100_G7I6T0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase III subunit RPC4 n=1 Tax=Medicago truncatula RepID=G7I6T0_MEDTR | SoyBase | E_val: 2.00E-100 | ISS |
| UniRef100_UPI000233C5F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C5F1 related cluster n=1 Tax=unknown RepID=UPI000233C5F1 | SoyBase | E_val: 0 | ISS |
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Glyma13g16900 not represented in the dataset |
Glyma13g16900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g05820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g109200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g16900.2 sequence type=CDS gene model=Glyma13g16900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCAGAGTCTGGAAAGGACGGTGCCGGCGTCCCAAGGAAGCTTAAATTTAAACCAAGAGCTCCACCTCGTCGAGTGATAAAGCAAGAAGTTAAAGCTGAAGTGGCTGATGATGTTGATGTTGATGCTGATGCAGAACATGCTGCTAAGGAGAATCTGCTGAAGCGTTTCCATGAGAGGGAGAGTGCGGTGAAGGCAAAGTACAAGGTTGAGAAAAAAGTGTTAGCTTCTCAAATTGCTTTTGGTTATGGTGGCGAATCAACTTCTATGAAATCATATGGTATTCCCAGGGGTGGGAGCAGTATCAACATCAATCAGAGTTCAGCATCTAATGGGGCGAAAGAGAAAGAATACCAAGAGCCATGGGACTATGACAGTAATTATCCAGTAACTCTTCCCTTGAGGAGGCCTTATTCTGGAAACCCAGCTCTTCTTGATGACCAAGAATTTGGGGAGGCTGCAGAGCCAAGAGCTTATGATGAAAATGCATCAAATTCAGCAATGGAGCTTGACCTTTTGGAGCACAACCCAGAGGCAAGTATGTTCTTTATTAATTTGCCTACAAAATTGCCTATGATTAAACAATCAGCTACTGCTGGAAGCAGCGATGTTAATGTGAAGTCTAGACCTCATGGGGGTTCAAAAAACGTGGAGGAGCTCTGTGAGTTGAACGAGTTATCATCTGGCTTCATGGGTAAAATGCTTGTATACAAAAGTGGTGCAATCAAGCTTAAGCTTGGCGATACCCTTTATGATGTTTCCTCGGGTATGAAATGTGCCTGTGCCCAAGATTTGGTTGCTATCAATACCGCTCAAAAACATTGTTGCACAATTGGGGAGATCAGCAAGCGTGTTTCTATAACCCCGGATATAGACGCCATAATTGACAATTTGCCTGATTTGTAA
>Glyma13g16900.2 sequence type=predicted peptide gene model=Glyma13g16900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASESGKDGAGVPRKLKFKPRAPPRRVIKQEVKAEVADDVDVDADAEHAAKENLLKRFHERESAVKAKYKVEKKVLASQIAFGYGGESTSMKSYGIPRGGSSININQSSASNGAKEKEYQEPWDYDSNYPVTLPLRRPYSGNPALLDDQEFGEAAEPRAYDENASNSAMELDLLEHNPEASMFFINLPTKLPMIKQSATAGSSDVNVKSRPHGGSKNVEELCELNELSSGFMGKMLVYKSGAIKLKLGDTLYDVSSGMKCACAQDLVAINTAQKHCCTIGEISKRVSITPDIDAIIDNLPDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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