Glyma13g16821 - SoyBase

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Report for Sequence Feature Glyma13g16821

Feature Type:	gene_model
Chromosome:	Gm13
Start:	20717010
stop:	20719769
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g16821

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06530	AT	Annotation by Michelle Graham. TAIR10: SNF7 family protein \| chr2:2588740-2590285 REVERSE LENGTH=225	SoyBase	E_val: 4.00E-77	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0000815	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ESCRT III complex	SoyBase	N/A	ISS
GO:0005771	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3230	KOG	Vacuolar assembly/sorting protein DID4	JGI		ISS
KOG3231	KOG	Predicted assembly/vacuolar sorting protein	JGI		ISS
PTHR10476	Panther	SNF7-RELATED	JGI		ISS
PTHR10476:SF4	Panther	BC-2 - RELATED	JGI		ISS
PF03357	PFAM	Snf7	JGI		ISS
UniRef100_B3TM11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Breast adenocarcinoma marker-like n=1 Tax=Elaeis guineensis RepID=B3TM11_ELAGV	SoyBase	E_val: 2.00E-77	ISS
UniRef100_UPI000233C5EC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C5EC related cluster n=1 Tax=unknown RepID=UPI000233C5EC	SoyBase	E_val: 2.00E-109	ISS

Expression Patterns of Glyma13g16821

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g16821 not represented in the dataset	Glyma13g16821 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16821

Paralog	Evidence	Comments
Glyma17g05880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16821 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g108400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g16821

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g16821

Limit To All Plant Sequences

>Glyma13g16821.2   sequence type=transcript   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCATCTTTGGAAAGAGGAAAACTCCCGCAGAGAGACAAGATTTGCAGTCACAGGAGAAGAAACTGATTTTGGAGATAAAGAAAAGTGCCAAACAAGGCCAGATGGGGGCTGTTAAAGTGATGGCAAAAGATCTTGTTAGAACAAGGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTACTTTGAAATCAACACAAGCAATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGTCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGACGAGAGACGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGGTTCTTGATGAGATTGGAATTGACTAAAAGCAAGAGCTTTTGAATGCACCATCAAATGCTGTTGCTGCCTCAGCTACAAAGACTAAGGTGCCTCAAGTTGGAACTGTTGGGAAGGATGCTGCTGCGATAGATAGCTATTTACAGGCAAGGTTATGCAATTTAAGAAAAATGCAATCTTCATTCTGATATAGGGACTCCAGTTTTACTGGGAAAACTGGAGCTCATTTGTAACATGCAGTGTAACCGTGTAAGTAATGAGCTGTAGAATT

>Glyma13g16821.3   sequence type=transcript   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTTTGAAATCAACACAAGCAATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGTCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGACGAGAGACGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGGTTCTTGATGAGATTGGAATTGACTAAAAGCAAGAGCTTTTGAATGCACCATCAAATGCTGTTGCTGCCTCAGCTACAAAGACTAAGGTGCCTCAAGTTGGAACTGTTGGGAAGGATGCTGCTGCGATAGATAGCTATTTACAGGCAAGGTTATGCAATTTAAGAAAAATGCAATCTTCATTCTGATATAGGGACTCCAGTTTTACTGGGAAAACTGGAGCTCATTTGTAACATGCAGTGTAACCGTGTAAGTAATGAGCTGTAGAATT

Coding sequences of Glyma13g16821

Limit To All Plant Sequences

>Glyma13g16821.1   sequence type=CDS   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCATCTTTGGAAAGAGGAAAACTCCCGCAGAGAGACAAGATTTGCAGTCACAGGAGAAGAAACTGATTTTGGAGATAAAGAAAAGTGCCAAACAAGGCCAGATGGGGGCTGTTAAAGTGATGGCAAAAGATCTTGTTAGAACAAGGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTACTTTGAAATCAACACAAGCAATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGTCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGACGAGAGACGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGCTTTTGAATGCACCATCAAATGCTGTTGCTGCCTCAGCTACAAAGACTAAGGTGCCTCAAGTTGGAACTGTTGGGAAGGATGCTGCTGCGATAGATAGCTATTTACAGGCAAGGTTATGCAATTTAAGAAAAATGCAATCTTCATTCTGA

>Glyma13g16821.2   sequence type=CDS   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCATCTTTGGAAAGAGGAAAACTCCCGCAGAGAGACAAGATTTGCAGTCACAGGAGAAGAAACTGATTTTGGAGATAAAGAAAAGTGCCAAACAAGGCCAGATGGGGGCTGTTAAAGTGATGGCAAAAGATCTTGTTAGAACAAGGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTACTTTGAAATCAACACAAGCAATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGTCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGACGAGAGACGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGGTTCTTGATGAGATTGGAATTGACTAA

>Glyma13g16821.3   sequence type=CDS   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGTCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGACGAGAGACGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGGTTCTTGATGAGATTGGAATTGACTAA

Predicted protein sequences of Glyma13g16821

Limit To All Plant Sequences

>Glyma13g16821.1   sequence type=predicted peptide   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFIFGKRKTPAERQDLQSQEKKLILEIKKSAKQGQMGAVKVMAKDLVRTRHQIEKFYKLKSQLQGTLKSTQAMGEAMKGVTKAMGHMNRQMNLSSLQKILQEFETQNERMELITEVTRDAIDDALEGDEEEEETEDLVNQLLNAPSNAVAASATKTKVPQVGTVGKDAAAIDSYLQARLCNLRKMQSSF*

>Glyma13g16821.2   sequence type=predicted peptide   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFIFGKRKTPAERQDLQSQEKKLILEIKKSAKQGQMGAVKVMAKDLVRTRHQIEKFYKLKSQLQGTLKSTQAMGEAMKGVTKAMGHMNRQMNLSSLQKILQEFETQNERMELITEVTRDAIDDALEGDEEEEETEDLVNQVLDEIGID*

>Glyma13g16821.3   sequence type=predicted peptide   gene model=Glyma13g16821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEAMKGVTKAMGHMNRQMNLSSLQKILQEFETQNERMELITEVTRDAIDDALEGDEEEEETEDLVNQVLDEIGID*

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