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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20490 | AT | Annotation by Michelle Graham. TAIR10: Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545 | SoyBase | E_val: 0 | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit development | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0048467 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gynoecium development | SoyBase | N/A | ISS |
| GO:0048768 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell tip growth | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0090436 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf pavement cell development | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016459 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: myosin complex | SoyBase | N/A | ISS |
| GO:0003774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0160 | KOG | Myosin class V heavy chain | JGI | ISS | |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF36 | Panther | MYOSIN I, HIGH MOLECULAR WEIGHT FORM | JGI | ISS | |
| PF00063 | PFAM | Myosin head (motor domain) | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| PF01843 | PFAM | DIL domain | JGI | ISS | |
| PF02736 | PFAM | Myosin N-terminal SH3-like domain | JGI | ISS | |
| UniRef100_B9RK43 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RK43_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LY26 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY26_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g16710 not represented in the dataset |
Glyma13g16710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g05970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g107400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g16710.1 sequence type=CDS gene model=Glyma13g16710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGCACCAGTGAATATTATTGTAGGTTCTCATGTCTGGATTGAAGATCCAGCACAAGCATGGATTGATGGAGAAGTTTCTAAAATCAATGGTGAAGAAGTCCATGTTCGCACCACAGATGGAAAAACAGTTGTCAAAAATATCTCAAAGGTTTTTCCCAAGGATAATGAAGCCCCTCCTGGTGGTGTAGATGACATGACAAAATTGTCTTACTTGCATGAACCAGGAGTTCTGCACAATTTGGCAACTAGATATGAACTCAATGAAATCTATACATATACTGGAAATATCTTGATTGCAATAAATCCTTTTCAAAGATTACCGCATCTATATGATACTCACATGATGGAACAATACAAAGGAGCTGCATTTGGAGAATTGAGTCCCCATGTTTTTGCAGTTGCAGATGTTGCATACAGGGCGATGATTAATGAGGGAAAAAGCAACTCAATCCTGGTTAGTGGTGAGAGTGGGGCTGGAAAGACAGAGACAACAAAAATGCTTATGCGGTATCTTGCATATCTTGGGGGCCGATCTGGAGTAGAAGGAAGGACAGTTGAACAACAAGTTCTAGAATCTAATCCAGTTCTTGAAGCATTTGGCAATGCCAAAACAGTTAGAAACAACAACTCAAGTCGTTTTGGAAAATTTGTTGAGATACAATTTGACAACAAAGGAAGAATCTCTGGGGCAGCTATACGGACATATTTGCTTGAAAGATCCCGTGTCTGTCAACTTTCGGATCCTGAAAGAAATTACCATTGTTTTTACCTTCTCTGTGCAGCACCAGCTGAGGAAAAAGAGAAGTATAAGCTGGGAAGTCCTAGCTCCTTTCATTACTTAAATCAATCCAAATGCTATGCGCTGGATGGAGTGGATGATGCTGAAGAATATCTTGCAACTCGAAGGGCAATGGATGTTGTTGGAATCAGTGAGGAGGAGCAGGAGGCTATTTTTAGGGTTATTGCAGCAATTTTGCACCTTGGAAATATTGAATTTGCAAAAGGAGAGGAGATTGACTCTTCTGTCATCAGGGACGAGAAGTCTAGGTTCCATCTTAATGTAACAGCTGAACTTCTAAAGTGTGATTGTAAGAGCTTGGAAGATGCACTGATCAAGCGTGTGATGGTAACACCGGAGGAGGTTATTACAAGAACCCTTGATCCTGTTGCAGCTCTTGGTAGCAGGGATGCATTAGCTAAAACCATTTATTCCCGTTTGTTTGATTGGCTAGTGGAGAAGATTAACAATTCGATTGGTCAAGATCCTAATTCAAAATCTATTATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTCAATAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTGCAACAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACACCAAAGAAGAGATCGATTGGAGTTACATAGAGTTTGTTGATAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTGCACTTCTTGATGAAGCCTGTATGTTTCCAAAGTCTACACATGAAACTTTTTCTCAGAAATTGTACCAGACATTCAAAAACAACAAGCGCTTCATCAAACCTAAACTTTCTCGGACTAGTTTTACAATATCCCATTATGCAGGGGAGGTGACATATCTAGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGCTCATAGCCTCAAAGTGCTCATTTGTGGCTGGTCTATTCCCCCCTTCTCCAGAGGAGTCTTCAAAATCATCAAAGTTCTCTTCAATAGGATCTCGCTTCAAGCTGCAACTTCAATCTTTGATGGAGACCCTGAATTCAACAGAACCTCACTATATCAGATGTGTGAAGCCGAATAATGTTCTCAAGCCTGCTATTTTTGAAAATCTCAATATTATCCAACAATTGCGCTGTGGTGGTGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACCAGACGGACCTTTTATGAATTTCTTAACAGATTTGGTGTTCTTGCCCCTGAAGTTCTGGACGGAAACTATGATGACAAGGTTGCGTGCCAAATGATCCTGGATAAAATGGGTATGAAAGGCTATCAGATAGGCAAGACAAAGGTTTTCTTAAGAGCTGGCCAGATGGCTGAATTGGATGCAAGAAGAGCAGAGGTTCTTGGAAATGCTGCTAGAATCATCCAGAGGCAAGTACGTACCCATATTGCACGCAAGGAGTTCATTGAATTGCGCCGAGCTGCAATTTGCTTGCAATCTAATTTACGAGGAATATTGTCCCGGAAACTTTATGAGCAGTTGCGACGTGAAGCAGGAGCTGTAAAAATACAAAAGAACTTCAAAGGATACATTGCCAGGAAATCATACTTAACAGGGCGATCATCTGCAGTTATACTGCAAACAGGTTTAAGGGCTATGAAAGCTCGTGATGAATTTAGATTTAGAAAGCAAACGAAGGCTGCAATTTACATCCAGGCTTATTTGCGTCGGCTAATTGCATATTCATATTATAAAAGATTGCAAAAGGCTGCAGTTGTTACTCAATGTGGTTGGAGGAGAAGGATTGCTAGAAGGGAACTTAGAATGCTTAAAATGGCTGCTAGAGAAACAGGGGCCCTCAAAGAAGCTAAGGACAAACTAGAAAAGCGTGTTGAAGAACTTACTTGGCGTTTGCAAATTGAGAAACGTTTGAGAACTGATTTGGAAGAGGAAAAGGCACAAGAAATTGCTAAGTTACAGGAAGCTTTACATGCAATGCAAATACAAGTAGAAGAAGCAAATACCAAGGTCATCAAAGAGCGCGAGGCAGCACGAAAGGCCATTGAAGAAGCACCTCCAGTTGTTAAGGAGACTCCTATTATAATTCAAGATACTGAAAAGATTAATTCATTATTGGCTGAAGTCAATAGTTTGAAGGAATCACTCCTATTGGAAAAAGAGGCTAAAGAAGAGGCCAGAAAAGCTCAGGCTGAGGCTGAAGCTAGAAATAAAGAGATGGTTAAAAAGGTTGAAGATTCTGACCGCAAAGTGGATCAACTTCAAGAATTGGTTCAGAGATTGGAGGAAAAGATTTCCAATGCAGAGTCAGAAAATCAAGTTCTTCGCCAGCAAGCACTGGCTGTATCACCAACTGGAAAAACTCTGTCTGCAAGACCAAGGACAGTGATTATTCAGAGGACACCCGAAAATGGGAATGCTCTAAATGGTGAAGCAAAAATTGGATCGGATATGACTCTTGCTGTATCCAATGTGCGTGAGCCTGAATCTGAGGGAAAACCACAAAAATCTCTCAATGAGAAGCAGCAAGAAAACCAGGACTTATTGATCAAGTGCATAACACAAGATTTGGGATTTTCTGGGGGCAAACCTGTTGCTGCATGTGTCATATATAAATGCCTTCTCCACTGGAGGTCATTTGAAGTTGAAAGGACTAGTGTATTCGACCGTATCATTCAAACAATAGCTTCAGCTGTTGAGGCCCAGGATAATACTGATGTTTTAGCCTATTGGTTGTCTAATACATCTACTTTGTTGTTGCTACTCCAACGCACTCTTAAAGCTAGTGGAGCTGCTAGCTTAACACCACAGCGGCGGAGAACAGCATCATCTTCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCGTCTCCCCAAAGTGCTGGATTGTCATTTCTAAATGGTCGAGGTCTTAATAGACTGGATGATTTACGACAAGTAGAAGCAAAATATCCAGCACTGCTGTTTAAGCAGCAGCTTACTGCCTTCCTTGAAAAAATATATGGAATGATAAGAGACAACCTAAAAAAGGAGATATCTCCATTACTTGGACTTTGTATACAGGCTCCAAGAAACTCGCGTCAAAGTCTAGTAAAAGGACGCGCACAGGCAAATGCAGTTGCTCAGCAAGCCTTAATTGCTCACTGGCAAAGTATTGTGAAAAGCTTAAACAATTATCTAAAGATAATGAAAGCAAACTATGCGCCTCCTTTCTTGGTCCGAAAAGTGTTCACTCAAATATTCTCATTCATCAATGTTCAATTATTCAATAGTCTTCTGTTGCGTCGGGAGTGTTGTTCGTTCAGCAATGGGGAGTATGTAAAAACAGGTCTGGCTGAATTAGAGCAGTGGTGCATCGAGGCAACAGAGGAGTATACTGGCTCTGCTTGGGAGGAACTGAAACATATCAGGCAGGCTGTTGGATTCCTGGTGATACATCAAAAACCCAAAAAATCCCTGAATGAAATTACAAAGGAGCTTTGCCCTGTTCTCAGTATACAACAGTTATACAGGATAAGTACAATGTACTGGGATGACAAATACGGCACTCACAGTGTGTCTACAGACGTTATAACAAACATGAGAGCTATGATGTCTGAGGACTCTAATAATGCTGTCAGCACTTCTTTCCTATTAGATGATGACTCGAGCATTCCTTTTTCGGTGGATGACATTTCCAAATCAATGCACCCAGTAGAAGTAGCAGACGTGGATCCTCCTCCGTTGATACGTGAGAACTCAGGGTTTGGGTTCTTACTAGCACGGTCAGAGTGA
>Glyma13g16710.1 sequence type=predicted peptide gene model=Glyma13g16710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAPVNIIVGSHVWIEDPAQAWIDGEVSKINGEEVHVRTTDGKTVVKNISKVFPKDNEAPPGGVDDMTKLSYLHEPGVLHNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYLLCAAPAEEKEKYKLGSPSSFHYLNQSKCYALDGVDDAEEYLATRRAMDVVGISEEEQEAIFRVIAAILHLGNIEFAKGEEIDSSVIRDEKSRFHLNVTAELLKCDCKSLEDALIKRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQMILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQVRTHIARKEFIELRRAAICLQSNLRGILSRKLYEQLRREAGAVKIQKNFKGYIARKSYLTGRSSAVILQTGLRAMKARDEFRFRKQTKAAIYIQAYLRRLIAYSYYKRLQKAAVVTQCGWRRRIARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEIAKLQEALHAMQIQVEEANTKVIKEREAARKAIEEAPPVVKETPIIIQDTEKINSLLAEVNSLKESLLLEKEAKEEARKAQAEAEARNKEMVKKVEDSDRKVDQLQELVQRLEEKISNAESENQVLRQQALAVSPTGKTLSARPRTVIIQRTPENGNALNGEAKIGSDMTLAVSNVREPESEGKPQKSLNEKQQENQDLLIKCITQDLGFSGGKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQSAGLSFLNGRGLNRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRNSRQSLVKGRAQANAVAQQALIAHWQSIVKSLNNYLKIMKANYAPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCIEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSTDVITNMRAMMSEDSNNAVSTSFLLDDDSSIPFSVDDISKSMHPVEVADVDPPPLIRENSGFGFLLARSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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