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Report for Sequence Feature Glyma13g16680

Feature Type:gene_model
Chromosome:Gm13
Start:20613320
stop:20618064
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26060AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L18ae family | chr4:13214972-13215955 REVERSE LENGTH=133 SoyBaseE_val: 4.00E-45ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
UniRef100_C6SXW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXW3_SOYBN SoyBaseE_val: 8.00E-102ISS
UniRef100_F4HV88UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L18ae family protein n=1 Tax=Arabidopsis thaliana RepID=F4HV88_ARATH SoyBaseE_val: 1.00E-18ISS

Expression Patterns of Glyma13g16680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16680
ParalogEvidenceComments
Glyma17g06010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g107100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g16680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g16680
>Glyma13g16680.2   sequence type=transcript   gene model=Glyma13g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTCTCTTGAATTTTTTATTATCCAATTCATAATTAACTTAAGACCCATAGAGGCATAGACACACAAGTACACAGCATAGTCAAGCTTTGAATTGTTGAATGTGTTGCGCTTGCGCCACGAACAGATGAATTAGAAAAGAAGCAGCAGCACCAACTTTTCTTGCTCAATACCCATCGAATGCAAAGACAAAGAGACTCTCTTTTTTAATTATTATTTCCTGTTCCTTTCTTCCTTCTTCTGACCAACCAGTAGGACTCCTTCAAAGGGATTTTGAGCGTTGTTTGAATTGCTGGAGGCCTGAGAGTGCAAACTAACTCCACAATCCATGGATAAAGATGCAAGGGTGGAAGAGACTGTTGATTTGCGAACCAATGTGGAGTTGGTTAGATCAGTCTCTGATAAGCATCATGATCTTTTGAGGCCATCTGCTCGGAACCTTTCGAGAGGACAATCAACAGATGCAGCTGGCCATGGAAAAGGAAAGTATGCCTTAATTAGAGACCCAGAGGTCTTCCAAACGGGAGTTTATGATAAGCCCCTTCCATTTTTTGGATGTGGAATCGGATGGTTCTCATTTCTTTTTGGATTTCTATGCCCTCCTATGTGGTTCTATGCTACAATTCTCTATTTTGGAAATCACTATCGGAAGGATCCTAGGGAGCGAGCAGGGCTGGGAGCCTCTGCAATTGCTGCATTAGTGTGTTCGGTAGCGTCGCTGATGATTGGAGTAATTCTTGTGTTACGGTACCTCTATGTCTAATTCACATGCAAAGGTGAAAATTGAGAAGTAGAAGCATTTGGAATCAATTCCGGCGGGATATTAGAAACAATTGGACATATGTATATAAGAACTTCAAATAGATGGAAAAAGACTTGCATATATTGTTGGTGAAGTAAATCACAGCAAGAAAATCTGTTGGCTATACCATAAGTTGAGAGAAGATAATGCGCCATATCCCTTATTTGTTTATTTTCTGAGCTGATGTATACTCAAAGAAATCTTTTGACGAGTGTTTATGAATCTTCCAAAATCACTATTAATTTTATTTCATTTATACCCTTTGGATGTGGAAGTGCTATTATATATGTTCTCCTATAGATATGAAAGGTGCAAGGCTCGAAGGTAGAAAACTAACGCAAGATAACTGATGCACACTGCTAATCATTTCATTCTGTCCTTCATATAGGGACGGGTCATGTACTCATGTGGGCCGCAAAACATGAAACTTTGACTGTTGTTACGCACATCCAGCACAAGTACTGATACATCCAGCAAATCAATGCAATTTTTATTTTATTCTTCCATAAATTATTAACAGGAAACTCTATCCAATCGAACTAATAATACAATTGTATTAT
Coding sequences of Glyma13g16680
>Glyma13g16680.1   sequence type=CDS   gene model=Glyma13g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGATGCAAGGGTGGAAGAGACTGTTGATTTGCGAACCAATGTGGAGTTGGTTAGATCAGTCTCTGATAAGCATCATGATCTTTTGAGGCCATCTGCTCGGAACCTTTCGAGAGGACAATCAACAGATGCAGCTGGCCATGGAAAAGGAAAGTATGCCTTAATTAGAGACCCAGAGGTCTTCCAAACGGGAGTTTATGATAAGCCCCTTCCATTTTTTGGATGTGGAATCGGATGGTTCTCATTTCTTTTTGGATTTCTATGCCCTCCTATGTGGTTCTATGCTACAATTCTCTATTTTGGAAATCACTATCGGAAGGATCCTAGGGAGCGAGCAGGGCTGGGAGCCTCTGCAATTGCTGCATTAGTGTGTTCGGTAGCGTCGCTGATGATTGGAGTAATTCTTGTGTTACGGTACCTCTATGTCTAA

>Glyma13g16680.2   sequence type=CDS   gene model=Glyma13g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGATGCAAGGGTGGAAGAGACTGTTGATTTGCGAACCAATGTGGAGTTGGTTAGATCAGTCTCTGATAAGCATCATGATCTTTTGAGGCCATCTGCTCGGAACCTTTCGAGAGGACAATCAACAGATGCAGCTGGCCATGGAAAAGGAAAGTATGCCTTAATTAGAGACCCAGAGGTCTTCCAAACGGGAGTTTATGATAAGCCCCTTCCATTTTTTGGATGTGGAATCGGATGGTTCTCATTTCTTTTTGGATTTCTATGCCCTCCTATGTGGTTCTATGCTACAATTCTCTATTTTGGAAATCACTATCGGAAGGATCCTAGGGAGCGAGCAGGGCTGGGAGCCTCTGCAATTGCTGCATTAGTGTGTTCGGTAGCGTCGCTGATGATTGGAGTAATTCTTGTGTTACGGTACCTCTATGTCTAA
Predicted protein sequences of Glyma13g16680
>Glyma13g16680.1   sequence type=predicted peptide   gene model=Glyma13g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDPEVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASAIAALVCSVASLMIGVILVLRYLYV*

>Glyma13g16680.2   sequence type=predicted peptide   gene model=Glyma13g16680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDPEVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASAIAALVCSVASLMIGVILVLRYLYV*






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