SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00990 | AT | Annotation by Michelle Graham. TAIR10: Transcription factor jumonji (jmjC) domain-containing protein | chr4:427035-431535 FORWARD LENGTH=840 | SoyBase | E_val: 5.00E-72 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12549 | Panther | JUMONJI DOMAIN CONTAINING PROTEIN-RELATED INCLUDING HAIRLESS | JGI | ISS | |
| PTHR12549:SF1 | Panther | HAIRLESS PROTEIN | JGI | ISS | |
| UniRef100_G7ZXC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 3B n=1 Tax=Medicago truncatula RepID=G7ZXC7_MEDTR | SoyBase | E_val: 9.00E-113 | ISS |
| UniRef100_I1KZN3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZN3_SOYBN | SoyBase | E_val: 1.00E-170 | ISS |
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Glyma13g16671 not represented in the dataset |
Glyma13g16671 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g16671.2 sequence type=transcript gene model=Glyma13g16671 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTTCTATAGAGTGAGAGTTTGGTTTTATATCCGTTAGCGGTGAATTTGGCGGTGTCGGCAGCGTTGGGAGGGTGGAGGGTGTGCAATGGAGCAATGTTTTTGCTTGAGGGAGGGGCTAATGGTTTGGGAATGGAAAGTGGGAGGGTGTGCAGTCGGAGTCGGAGTGAGGTTAGTGGAGTCAGAGTCGGAGTGAGGCTGGATGGACCTGTGCCCCTAAAAGACGACGTTTTGGAAAAGGAAGTGGTTTTCGAGCAGTGCGTGACGCGGACTCTGTCTCCGGCGTTGACATTGGAGGAGGGACTTGAGAAACTGAAGGAGGCTCTCCAAATCTTGAATTCTCCTTCCCCTTCTTCCCCTACTGGATTCCTTAGGTTTCAGGTGGCGCTCCTTCCCAGTCCTAAGACCTTCACTTTGTTTTGCTCCCAACCCCACTCCTCCTCGGTCTTTCCTCTCATTTATGTTTCCAAGAACGACGCCGACTCTAAATCACTCTATGTCAATTTGGATGATAATGTGAGTCACCAGAAAGAAAGGTTCTTTTTGGTTTTTCATACCTCAGATAAAGGTTCAACAATCTTATTGTCATTACTTTAATAACTTTAAATACTAATTCTTTAGCCGCTCCCAGATTGAGTTAGATGAGCTGGAAAGTGTTTCCATTCTGTCAATGACCCTTGCATGGGATGAATTTTCCTTCTCTACTTTTCAAGAAGCCCATTATTCGCTTCAAGATTCTCTAGACCAGCTGTAGATCTTCAGTACAAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTCCTTGAATGTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTACGTCATGTAACTAATACCAAGCATGGCCAACATTTGGCGGAGAAAACAATTGATTGCTTAGATTGGACTGAGGTATTGGTTAAATGCAGGGGGAAATTAATATCCACCAAACTTTTATTGGCTATACAAATGGTCGTAGGGATTGGCTTGCTTGGCCACAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTACCCTTCAAGGAATATACTGATCCTCACAAAGGTTCTCTTAACCTTGCTGTGAAGTTGCCTAATGGTTCTCTAAAGCCAGACCTGGGGCCAAAAACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAACTGGATTCTGATCAACTTACTGTCATTGAGAAGTTGAAGCAAAAGCATCTCGAGCAAGAGAAAAGGGAGCTACTTGGTGATGATCAAGATGGAGAAACTAATGTTGACATGGTTAATAATTCATCTTCTACAATAAATGCTTTGGACAGGCAAAGTAGTGTTGAAGTCATGGAACAAGAAGGTGGATTATGTGATGGGATAGAAGTTGATCAGTTTCATCAACCGTCTGGTAGTAATGAGGTTGCCATTGCTAATGAGGATGGTATTTCATATGGATCAGAGCTCATAGAGGTTGACAAAGTAAAAATAAATCAAGGTGATTTGTTGTTTGGGGGGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTCCCTAAGTTGCAGGAATATCTGGAAGAATTTCAGAGAGTTTAGGTATGTCCATTGCTGTCGTTTAAAGCAGGTAAATTATTAAAATGATTCAGTTATCTGTCTGAGTACTCCTTATCAACCTGAGTCATTTATAACAAATATTTTCACCTTTAGGTTATATTTTTAAATTTTAATATTTGGAGCTTT
>Glyma13g16671.1 sequence type=CDS gene model=Glyma13g16671 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGCGTGCATTACGTCATGTAACTAATACCAAGCATGGCCAACATTTGGCGGAGAAAACAATTGATTGCTTAGATTGGACTGAGGGGGAAATTAATATCCACCAAACTTTTATTGGCTATACAAATGGTCGTAGGGATTGGCTTGCTTGGCCACAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTACCCTTCAAGGAATATACTGATCCTCACAAAGGTTCTCTTAACCTTGCTGTGAAGTTGCCTAATGGTTCTCTAAAGCCAGACCTGGGGCCAAAAACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAACTGGATTCTGATCAACTTACTGTCATTGAGAAGTTGAAGCAAAAGCATCTCGAGCAAGAGAAAAGGGAGCTACTTGGTGATGATCAAGATGGAGAAACTAATGTTGACATGGTTAATAATTCATCTTCTACAATAAATGCTTTGGACAGGCAAAGTAGTGTTGAAGTCATGGAACAAGAAGGTGGATTATGTGATGGGATAGAAGTTGATCAGTTTCATCAACCGTCTGGTAGTAATGAGGTTGCCATTGCTAATGAGGATGGTATTTCATATGGATCAGAGCTCATAGAGGTTGACAAAGTAAAAATAAATCAAGGTGATTTGTTGTTTGGGGGGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTCCCTAAGTTGCAGGAATATCTGGAAGAATTTCAGAGAGTTTAG >Glyma13g16671.2 sequence type=CDS gene model=Glyma13g16671 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGGGGAAATTAATATCCACCAAACTTTTATTGGCTATACAAATGGTCGTAGGGATTGGCTTGCTTGGCCACAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTACCCTTCAAGGAATATACTGATCCTCACAAAGGTTCTCTTAACCTTGCTGTGAAGTTGCCTAATGGTTCTCTAAAGCCAGACCTGGGGCCAAAAACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAACTGGATTCTGATCAACTTACTGTCATTGAGAAGTTGAAGCAAAAGCATCTCGAGCAAGAGAAAAGGGAGCTACTTGGTGATGATCAAGATGGAGAAACTAATGTTGACATGGTTAATAATTCATCTTCTACAATAAATGCTTTGGACAGGCAAAGTAGTGTTGAAGTCATGGAACAAGAAGGTGGATTATGTGATGGGATAGAAGTTGATCAGTTTCATCAACCGTCTGGTAGTAATGAGGTTGCCATTGCTAATGAGGATGGTATTTCATATGGATCAGAGCTCATAGAGGTTGACAAAGTAAAAATAAATCAAGGTGATTTGTTGTTTGGGGGGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTCCCTAAGTTGCAGGAATATCTGGAAGAATTTCAGAGAGTTTAG
>Glyma13g16671.1 sequence type=predicted peptide gene model=Glyma13g16671 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWRALRHVTNTKHGQHLAEKTIDCLDWTEGEINIHQTFIGYTNGRRDWLAWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKEYTDPHKGSLNLAVKLPNGSLKPDLGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSDQLTVIEKLKQKHLEQEKRELLGDDQDGETNVDMVNNSSSTINALDRQSSVEVMEQEGGLCDGIEVDQFHQPSGSNEVAIANEDGISYGSELIEVDKVKINQGDLLFGGDASDGALWDIFRRQDVPKLQEYLEEFQRV* >Glyma13g16671.2 sequence type=predicted peptide gene model=Glyma13g16671 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQGEINIHQTFIGYTNGRRDWLAWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKEYTDPHKGSLNLAVKLPNGSLKPDLGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSDQLTVIEKLKQKHLEQEKRELLGDDQDGETNVDMVNNSSSTINALDRQSSVEVMEQEGGLCDGIEVDQFHQPSGSNEVAIANEDGISYGSELIEVDKVKINQGDLLFGGDASDGALWDIFRRQDVPKLQEYLEEFQRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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