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Report for Sequence Feature Glyma13g16610

Feature Type:gene_model
Chromosome:Gm13
Start:20528047
stop:20530711
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57040AT Annotation by Michelle Graham. TAIR10: Lactoylglutathione lyase / glyoxalase I family protein | chr5:23084035-23085116 REVERSE LENGTH=197 SoyBaseE_val: 4.00E-89ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR10374Panther LACTOYLGLUTATHIONE LYASE JGI ISS
PTHR10374:SF0Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI ISS
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI ISS
UniRef100_D7MM99UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MM99_ARALL SoyBaseE_val: 7.00E-86ISS
UniRef100_I1LY18UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LY18_SOYBN SoyBaseE_val: 7.00E-156ISS

Expression Patterns of Glyma13g16610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16610
ParalogEvidenceComments
Glyma17g06060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g106600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g16610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g16610
>Glyma13g16610.1   sequence type=CDS   gene model=Glyma13g16610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGTTGTTCTTGCTCTGCCATGGCCTTCCTTCTCAAAGCACCTTCCTTTCTCCCTCCTCTTAACCAAAAGTTGAATTATACCCATAAAAGCTTTTCTCCCATAAACCTGCAATCCAAATTTTACCATGCTAGTGTCAGAAATGGGAGATGGAACGTTCCTAGCATGACAATAAAAGCTCAGGCAGCTGTTGAAGGGGATGTACTACTTGACGAAGAATCCATCTGTGTCAATGAAGAAAGTGATTACGGGGTCGTTTGTATGCACCATGTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTTTATCAAAATGTTCTAGGCCTCAAGATAAATGAAGCAAGGCCACATAATAAGCTTCCATACAGGGGTGCTTGGTTGTGGGTAGGCTCTGAGATGATTCATTTGATGGAGCTTCCAAACCCTGACCCTTTAACTGGACGACCTCAACACGGTGGTCGAGATCGTCACACGTGTATTGCAATTCGTGATGTTTCTAAGCTGAAAGCAATCTTTGATAAAGCTGGTATCGCTTACACACTTAGTCATTCTGGAAGACCAGCAATCTTTACACGTGATCCCGATGCAAATGCTTTAGAGTTTACACAAGTAGATGATTGA
Predicted protein sequences of Glyma13g16610
>Glyma13g16610.1   sequence type=predicted peptide   gene model=Glyma13g16610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCCSCSAMAFLLKAPSFLPPLNQKLNYTHKSFSPINLQSKFYHASVRNGRWNVPSMTIKAQAAVEGDVLLDEESICVNEESDYGVVCMHHVGILCENLERSLDFYQNVLGLKINEARPHNKLPYRGAWLWVGSEMIHLMELPNPDPLTGRPQHGGRDRHTCIAIRDVSKLKAIFDKAGIAYTLSHSGRPAIFTRDPDANALEFTQVDD*






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