Glyma13g16480 - SoyBase

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Report for Sequence Feature Glyma13g16480

Feature Type:	gene_model
Chromosome:	Gm13
Start:	20434501
stop:	20438358
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g16480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56960	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding family protein \| chr5:23038703-23041174 REVERSE LENGTH=466	SoyBase	E_val: 4.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IIK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor MYC4 n=1 Tax=Medicago truncatula RepID=G7IIK8_MEDTR	SoyBase	E_val: 1.00E-140	ISS
UniRef100_I1LY03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LY03_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g16480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g16480

Paralog	Evidence	Comments
Glyma17g06190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g16480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g105400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g16480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g16480

Limit To All Plant Sequences

>Glyma13g16480.2   sequence type=CDS   gene model=Glyma13g16480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGCGTCTTCACCCTCCCTAAAGCCGCCAGAGCTGATTTTTTTCGCTCTCTGGTGCAATCTTTTGGCTGCACTTACGTTTGTCTGTGGCAATATGACTCCAATTTATCAAATTTGTTCTTCTTTGATGGTTACTGCGATGTAACGAACAACCAACCAAGCTCTTATTTAGGGAGTGTAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACATTTGATGTCAATCACGAATGTGTACCTGGAGTCGCTTTCAGGAATCAGCTTCCCTACATTGAGCTGCAACTATTGGATCTTCTAAGACTGACTTCGACAGAAATACAAACACAATTCTTTCAAATTGCTGTTTTCATGGGGTGCAAAAACGGAGAAATTGAGCTTGGGTTCTCCAACATTTCTCAAGTAATTAAGAAAACTATACTACCTTCATCATCATTTTGCTTCATGTCATTATCCACGGGTAGCCCTGATCAATGTTCATCATCACTATTACTCAGTAGTATTCCGGGTACTTCCCAGTCCCATTTTCCTCAAACCCTTCCCACACAAACACACCAACAACAAAGCATCCAAGAAATAGATTTAGCTCCTGTCATTCCAAGTTATTTTCCCACACCAGATGGTGAACATGAAGCAATAGTAAGAGCACTTATGAGTGTTATGTCTCCACTTTCTTCTTCTTCTTCAACTTCTCAGCAGCATCAACCCCGCCAAATTTTGCCTAATTATACTTCAATAGTACATCCAGGAGCCACCGCTTTCAATACATATAGATCAGATACAATGAACCCTAATATAACACCCTACATGGGATCCAATTTTCGCAGGCAAAGCCCACAGAATAGATCATTTGCATTCTTTACAAACTTAAATTTGATGAGAATGAGAGAACTCGTTAGTCAACCTGCATCCCGTCCCATTAGTACCCAACACCAGCAGCATCATATGATAACAGAGCGAAGAAGGCGCGAAAAACTCAATGAGAGTTTTCAGGCACTTAGAGCTCTTCTTCCTCCAGGAACTAAGAAAGCCAAAGGGACGATCCTTACAACAGCAAAGGATACAATGAGATCATTGATGGATGAAATTGAAAAGATTAACTTGAGAAATCAGCAGCTGATGGCAGTTTTATCAGCAAAAGAAACTACAGTGTCAGCTACTAGTACTGAAGAAAACAAAGCTAAACCTAGCAGTAGCTCCTCAAATGAAAGATTGAATGTTCTTGTTTCGGCCGTGTTGGAATCGAGTTCATTATCAGAAGAGCGAATGGTGGACGTGCAAGTGACACTGAGAGGAGAAAGTTCTCGAGTTGATGTATTGATTCGGCTATTGGAATTCTTAGAAAGGGTTCAGAACGTAAACTTGGTTTCCATGTACGCAAACAACCATATTATAGGAGGGACAACCATTAACCAATTAACCTTCAGACTGAGGATTATTGAGGGCAATGAATGGGACGAGCATGCCTTGGAGGAAGCAGTTAGAAGAGTGGTTGCTGACACAATACAGTGGAAACCACTGGACCAATAA

Predicted protein sequences of Glyma13g16480

Limit To All Plant Sequences

>Glyma13g16480.2   sequence type=predicted peptide   gene model=Glyma13g16480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGVFTLPKAARADFFRSLVQSFGCTYVCLWQYDSNLSNLFFFDGYCDVTNNQPSSYLGSVAERLFHQYRALTFDVNHECVPGVAFRNQLPYIELQLLDLLRLTSTEIQTQFFQIAVFMGCKNGEIELGFSNISQVIKKTILPSSSFCFMSLSTGSPDQCSSSLLLSSIPGTSQSHFPQTLPTQTHQQQSIQEIDLAPVIPSYFPTPDGEHEAIVRALMSVMSPLSSSSSTSQQHQPRQILPNYTSIVHPGATAFNTYRSDTMNPNITPYMGSNFRRQSPQNRSFAFFTNLNLMRMRELVSQPASRPISTQHQQHHMITERRRREKLNESFQALRALLPPGTKKAKGTILTTAKDTMRSLMDEIEKINLRNQQLMAVLSAKETTVSATSTEENKAKPSSSSSNERLNVLVSAVLESSSLSEERMVDVQVTLRGESSRVDVLIRLLEFLERVQNVNLVSMYANNHIIGGTTINQLTFRLRIIEGNEWDEHALEEAVRRVVADTIQWKPLDQ*

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