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Report for Sequence Feature Glyma13g16461

Feature Type:gene_model
Chromosome:Gm13
Start:20410045
stop:20415475
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16461
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29840AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263 SoyBaseE_val: 2.00E-66ISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF234Panther ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN JGI ISS
PF02129PFAM X-Pro dipeptidyl-peptidase (S15 family) JGI ISS
UniRef100_A2Q1D5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Esterase/lipase/thioesterase n=1 Tax=Medicago truncatula RepID=A2Q1D5_MEDTR SoyBaseE_val: 2.00E-76ISS
UniRef100_I1LXZ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXZ8_SOYBN SoyBaseE_val: 2.00E-153ISS

Expression Patterns of Glyma13g16461
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g16461 not represented in the dataset
Glyma13g16461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g16461 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g105200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g16461
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g16461
>Glyma13g16461.1   sequence type=CDS   gene model=Glyma13g16461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTACTGTCTTGACGGGTCCGGTCGGAACTTTACCTCATCAGGTTTTTGAATCCAGGAAGCATTCACAACCAATCTTTTCTGATTTTTCTCGCAAATTGGTTCGCATTTCCAGAAAAACCCTGAGCTTGAAGATGGCCCAAGCTGCTCAAAACCCTACTCGGCAGCAGAAAGTCATAATAACTAACAAGTATGGCAATAAACTAGTGGGCATTTTGCATGAATCTGGAACCAAAGAGATTGTTATCCTTTGCCATGGTCTTCGATCCACCAAGGAAGATGATATCATCATAAATCTTGCTGCTGCTCTAGAAAATGCAGGAGTCAATTCTTTTCGCTTTGACTTCACTGGAAATGGGGAAAGTGAAGGTTCATTTGAGTTTGGTCACTATTGGAGGGAGGTGGATGATCTACATGATGTGGTTCAACACTTACATAGGGAAAACCCTAAAGTTATTGCAATCATTGGACACAGTAAAGGAGGTAGCGTGGTGCTTCTTTATGCTTCTAAACATCATGACATTAAAACTGTTGTCAACCTCTCTGGACGCTATGATCTGAAGGCAGGACTTGAAGAACGCCTTGGAAAAGATTATTTGGAAAGAATTAGGAAGGATCGTTTCATTGATGTGATGCAGTTAGGAAGTTTTTGA
Predicted protein sequences of Glyma13g16461
>Glyma13g16461.1   sequence type=predicted peptide   gene model=Glyma13g16461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITVLTGPVGTLPHQVFESRKHSQPIFSDFSRKLVRISRKTLSLKMAQAAQNPTRQQKVIITNKYGNKLVGILHESGTKEIVILCHGLRSTKEDDIIINLAAALENAGVNSFRFDFTGNGESEGSFEFGHYWREVDDLHDVVQHLHRENPKVIAIIGHSKGGSVVLLYASKHHDIKTVVNLSGRYDLKAGLEERLGKDYLERIRKDRFIDVMQLGSF*






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