SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04410 | AT | Annotation by Michelle Graham. TAIR10: Lactate/malate dehydrogenase family protein | chr1:1189418-1191267 REVERSE LENGTH=332 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malate metabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to zinc ion | SoyBase | N/A | ISS |
| GO:0044262 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016615 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0030060 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity | SoyBase | N/A | ISS |
| KOG1496 | KOG | Malate dehydrogenase | JGI | ISS | |
| PTHR23382 | Panther | MALATE DEHYDROGENASE | JGI | ISS | |
| PF00056 | PFAM | lactate/malate dehydrogenase, NAD binding domain | JGI | ISS | |
| PF02866 | PFAM | lactate/malate dehydrogenase, alpha/beta C-terminal domain | JGI | ISS | |
| UniRef100_I1LXZ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Malate dehydrogenase n=1 Tax=Glycine max RepID=I1LXZ7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LXZ7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Malate dehydrogenase n=1 Tax=Glycine max RepID=I1LXZ7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g16440 not represented in the dataset |
Glyma13g16440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g104800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g16440.1 sequence type=CDS gene model=Glyma13g16440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATTGGAAATGATAGCTGTGGAGATTGCGGACTATATAGTTCTTAAAAAAATTATTCTTGTTTTGTTTTGTATTATTTTGTTTTGTAAGATTGTTAGATACATGTTCAGTCTTCTCAAAGAAGAGAAAGAACCAATCACAATATTAGTCACCGGTGCAGCAGGCCAAATTGGATATGCTCTTGTTCCAATGATTGCAAGAGGGGCAATGTTGGGCCCAAATCAACCTATGATTCTACACATGCTTGACATTGAACCGGCAACAGAATCCTTAAAAGGGCTGAAGATGGAACTAATTGATGCTGCTTATCCACTTCTCAGAGGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGCAAGGATGTCAATATTGTTGTAATGGTTGGTGGATTCCCGCGAAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTATCAATTTATAAGGCTCAGGCTTCAGCACTAGAGCAGCATGCTGCAACAGATTGTAAGGTACTAGTGGTTGCCAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAATTTGCTCCTTCAATTCCTGAGAAAAACATTACCTGCCTTACACGACTTGATCACAATAGAGCATTAGGCCAAATCTCAGAGAGGCTAAATGTTCTTGTTAGTGATGTGAAAAATGTCATTGTTTGGGGCAACCACTCCTCAACCCAATATCCAGATGTCAACCATGCCACCGTCACTACCAATAGTGGAGAAAAACCAGTTAGAGAATTAGTTGTGGATGATAATTGGCTAAACAATGAGTTTATCACCACTGTTCAACAACGTGGGGCTGCCATTATTAAAGCAAGGAAGCAGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCACATACGTGATTGGGTACTAGGTACTCCTAAGGGAGAATGGGTATCAATGGGAGTATATTCTGATGGATCTTATGGTATCCCAACTGGCCTCATTTACTCTTTTCCTGTTACGTGTGAGAGAGGAGATTGGAACATTGTTCAAGGACTCAAGATTGATCAATTTTCAAGGGAAAAGATGGACAAAACAGCCCAAGAGCTTATTGAGGAAAAAACATTGGCAAAGTCATGTCTTAATTGA
>Glyma13g16440.1 sequence type=predicted peptide gene model=Glyma13g16440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLEMIAVEIADYIVLKKIILVLFCIILFCKIVRYMFSLLKEEKEPITILVTGAAGQIGYALVPMIARGAMLGPNQPMILHMLDIEPATESLKGLKMELIDAAYPLLRGVVATTDVVEACKDVNIVVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAATDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVLVSDVKNVIVWGNHSSTQYPDVNHATVTTNSGEKPVRELVVDDNWLNNEFITTVQQRGAAIIKARKQSSALSAASAACDHIRDWVLGTPKGEWVSMGVYSDGSYGIPTGLIYSFPVTCERGDWNIVQGLKIDQFSREKMDKTAQELIEEKTLAKSCLN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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