Report for Sequence Feature Glyma13g16430
Feature Type: gene_model
Chromosome: Gm13
Start: 20381944
stop: 20386055
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g16430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G56970 AT
Annotation by Michelle Graham. TAIR10: cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523
SoyBase E_val: 0 ISS
GO:0009690 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process
SoyBase N/A ISS
GO:0009823 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinin catabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008131 GO-mf
Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity
SoyBase N/A ISS
GO:0008762 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016614 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors
SoyBase N/A ISS
GO:0019139 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cytokinin dehydrogenase activity
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
KOG1231
KOG
Proteins containing the FAD binding domain
JGI ISS
PTHR13878 Panther
GULONOLACTONE OXIDASE
JGI ISS
PTHR13878:SF19 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01565 PFAM
FAD binding domain
JGI ISS
PF09265 PFAM
Cytokinin dehydrogenase 1, FAD and cytokinin binding
JGI ISS
UniRef100_H7BRI4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin dehydrogenase 3 n=1 Tax=Glycine max RepID=H7BRI4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LXZ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXZ6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g16430
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g16430
Paralog Evidence Comments
Glyma17g06220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g16430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g104700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g16430
Coding sequences of Glyma13g16430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g16430.1 sequence type=CDS gene model=Glyma13g16430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCTACACTACCCTTTTCCAACCTACTTCATACTACTACTAGTAACCATAACCCGTTTGATATACACCGTGGGAAAAACCGAGCAATGGAAAGCTCCGATTCTAACAGAGCTTGACATTAATAACATATCCCACAAACTCCATGATGATCCTGAAATCATTCAAATGGCTTCAAGGGACTATGGCCACATCGTGCATGAATTCCCATTAGCTGTGTTTCGTCCATCTTCTATAGACGACATAGCCACCTTGATAAAATCCTCCTACAATAGCTTTGCCCCTTTTGGCATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGACAAGCCATGGCTCGTGATGGGGTTGTGGTTGACATGGCCAACCTCAGAAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGATGGGTCACTATGCGGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATACCACACTTAAACATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCCAATGCTGGAATCAGTGGCCAGAGCTTCCGTTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACTTGCTCTTCACAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGCTTAGGGCAATTTGGAGTTATAGCAAGGGCGAGAATAGCACTTGAGCCAGCCCCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTTTGCTTTTACCAAAGATCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAACGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATATCTTCTTTAATAACTGAACATAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGAACAAACCGAGATAAATGTGGACAAGGAAATTCAAGTTTTGCTCCAAGGACTAGCCTATATCCCTGGGTTTTATTATGAGAAAAACGTGTCGTACGTTGAGTTCTTGAATAGGGTCCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTGTGGGATGTTCCTCACCCATGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTAATTCAAGAGTATTCAAAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTACCCCACGAATAGAAACAAGTGGGACGATAGGATGTCAGCATCTATACCAGACGAGGAGGTTTTCTACACAGTTGGATTTTTGCACTCAAGTGGGTTTGATACTTGGAAAGCATATGATGCTCAAAACAGTGAAATTTTGGAGTTCTGTAGAGATGCTGGCATCAAGGTCAAGCAATATCTTCCCAACCACAGCACACAGGAAGATTGGACAAACCATTTTGGTGCTAAATGGATAAAATTCTTAGAAAGAAAACATCAGTTTGATCCAAGAATGATTCTATCACCAGGGCAAAAAATCTTCCACAAACAATTACAGCCAGCGTTTTAA
Predicted protein sequences of Glyma13g16430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g16430.1 sequence type=predicted peptide gene model=Glyma13g16430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALHYPFPTYFILLLVTITRLIYTVGKTEQWKAPILTELDINNISHKLHDDPEIIQMASRDYGHIVHEFPLAVFRPSSIDDIATLIKSSYNSFAPFGIAARGQGHSTHGQAMARDGVVVDMANLRKQRNGVAISVSKDPLMGHYADVGGEQLWIDVLHTTLKHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFFAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRISSLITEHSILYCLEVAKYYDEQTEINVDKEIQVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQILDFNSRVFKDIVLKRNISSGPVLVYPTNRNKWDDRMSASIPDEEVFYTVGFLHSSGFDTWKAYDAQNSEILEFCRDAGIKVKQYLPNHSTQEDWTNHFGAKWIKFLERKHQFDPRMILSPGQKIFHKQLQPAF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
