SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G56900 | AT | Annotation by Michelle Graham. TAIR10: CwfJ-like family protein / zinc finger (CCCH-type) family protein | chr5:23019750-23022670 REVERSE LENGTH=596 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2476 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12072 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04676 | PFAM | Protein similar to CwfJ C-terminus 2 | JGI | ISS | |
| PF04677 | PFAM | Protein similar to CwfJ C-terminus 1 | JGI | ISS | |
| UniRef100_B9RK71 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RK71_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LXZ3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXZ3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g16390 not represented in the dataset |
Glyma13g16390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g06240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g104400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g16390.3 sequence type=transcript gene model=Glyma13g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTACATTTTTGTTTATAAATTAAATTTAAATTTATTTACTGTTGGAAACGCCTGAGATAGAATCAAAGCCAGGTCGCTCCGACGCAACGGTGAGCTTAGTTAGTGTGAAGAGGTTCCGTCATCGTCATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTGAATCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCCCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGGTCCCACTTTCCTCTCCCGACGTACTTCGTCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCCTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGATGGCTTCAAGGTTTGCCACAACTTGTACTGGCTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCTTCCAGTGCTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCATTGCGAGCAATTGCCGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAATGAATGGCCGAGTGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCCGGACTCTCTGATGCTGCAGGCGGTGATTCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATATGAGGAGAAAAGAACTTCTCCAATGGATTCAACAAAAAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGGACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGTGGTAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAGGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTACTGATTATACCAGTCGAGCATATGCCTAGTACCTTATCCATGTCTTCTGAATCTGAAATAGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGTCTCCGTACGTGGCACTCATGCCAATATTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGCCGAGAAAATTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGACTAAGAAATTTGATAGCATTTCTGAAGGAAGGAAGTTTTTGAAGGCGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGTTTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAGATTGTTCGTACAGTGAATTCTTAATTTACTAGAAAGTCATCATGATTATGGTGATTCCTTGTTCATCTTTCGGTTATATGCCCTAATTGATTCAGTGCTGAATGCCAAACTGAAAGATTTTACAGCCCTGCTGGATTTCATTTGGTAACCTTTTTTTGTCAGCAGCTTCTGTGATGTTACATGCACCTTATTTTCAGGCAAAGAATCACCAAGCCGAGGTTGCCATTTTATAACTTAGGCTATGAGCATCAGTCAGCAAGCAGCTGTTGCATTCAAGTTTTGAAACGATTTTCACCTGCTTTTTGTACGTAATTAAGAAGATATTTGTATTTGTTTCGAGAGGCAAGGAGGTTGAGGGCGAGAGGAGATTCGCTTCAACTTCTGCTCGTGAAGCAGTAACCTTTTTTATTCAATCTTGAGATCTTACAAGATTTGTACTTGCAGTTGCGTTGTGTTAAAAGTTTGTACAATTTGTGTATTTTCTCAAAGCTCAGCTTCCACCATTTTATGGAAAATTCAATTCACTGGGCTTTTCCATTTTGTTACGAAATTACCGTGCCTTTTCACTCGTA
>Glyma13g16390.2 sequence type=CDS gene model=Glyma13g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTGAATCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCCCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGGTCCCACTTTCCTCTCCCGACGTACTTCGTCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCCTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGATGGCTTCAAGGTTTGCCACAACTTGTACTGGCTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCTTCCAGTGCTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCATTGCGAGCAATTGCCGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAATGAATGGCCGAGTGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCCGGACTCTCTGATGCTGCAGGCGGTGATTCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATATGAGGAGAAAAGAACTTCTCCAATGGATTCAACAAAAAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGGACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGTGGTAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAGGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTACTGATTATACCAGTCGAGCATATGCCTAGTACCTTATCCATGTCTTCTGAATCTGAAATAGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGTCTCCGTACGTGGCACTCATGCCAATATTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGCCGAGAAAATTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGACTAAGAAATTTGATAGCATTTCTGAAGGAAGGAAGTTTTTGAAGGCGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGTTTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG >Glyma13g16390.3 sequence type=CDS gene model=Glyma13g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTGAATCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCCCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGGTCCCACTTTCCTCTCCCGACGTACTTCGTCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCCTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGATGGCTTCAAGGTTTGCCACAACTTGTACTGGCTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCTTCCAGTGCTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCATTGCGAGCAATTGCCGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAATGAATGGCCGAGTGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCCGGACTCTCTGATGCTGCAGGCGGTGATTCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATATGAGGAGAAAAGAACTTCTCCAATGGATTCAACAAAAAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGGACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGTGGTAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAGGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTACTGATTATACCAGTCGAGCATATGCCTAGTACCTTATCCATGTCTTCTGAATCTGAAATAGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGTCTCCGTACGTGGCACTCATGCCAATATTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGCCGAGAAAATTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGACTAAGAAATTTGATAGCATTTCTGAAGGAAGGAAGTTTTTGAAGGCGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGTTTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG
>Glyma13g16390.2 sequence type=predicted peptide gene model=Glyma13g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFVGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFSLFGLSVAYLSGRKSSSAQQFGTYTEDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRAADSDIPAGLSDAAGGDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTYEEKRTSPMDSTKRSSDSISDPQYWRYDVSQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFRHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGGRLPSRRPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWVSVRGTHANIQAIPIPSSKAIMAEKIFNLAAQKLGFEFVTKKFDSISEGRKFLKAQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEVFKSRFQEYDPNC* >Glyma13g16390.3 sequence type=predicted peptide gene model=Glyma13g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFVGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFSLFGLSVAYLSGRKSSSAQQFGTYTEDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRAADSDIPAGLSDAAGGDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTYEEKRTSPMDSTKRSSDSISDPQYWRYDVSQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFRHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGGRLPSRRPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWVSVRGTHANIQAIPIPSSKAIMAEKIFNLAAQKLGFEFVTKKFDSISEGRKFLKAQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEMKIVEVFKSRFQEYDPNC*
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