Glyma13g16170 - SoyBase

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Report for Sequence Feature Glyma13g16170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	20029661
stop:	20039611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g16170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06600	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 \| chr5:2020682-2027834 REVERSE LENGTH=985	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF110	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_B0BLB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1LXZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g16170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g16170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g027600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g16170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g16170

Limit To All Plant Sequences

>Glyma13g16170.1   sequence type=CDS   gene model=Glyma13g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGTGATGATGCCCGCTCCCATTGATCAGCAAGAGGACGAGGACGTGCTCGTGCCGGACGCGGATTTGCCTGAGAACAATCACCAACCCATGGAAGTTGTAGCTCAACCTGAAAATGCCAATACTGTGGAGAGTCAGCCCGTTGAAGATCCTCCGTCATCTAGATTTACATGGAGAATTGATAACTTTTCAAGGCTGAATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATGGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATGCATAATAAGTATTCTGTGAGAAAAGACACACAGCACCAGTTTAATGCACGTGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGCATGATACTCTTATAGTCGAAGCTGAGGTTCTTGTTCGTAGGATTGTTGATTACTGGACTTATGATTCAAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCAACAACTGAGAATGATATGCCCACTGGTAGCATCCCTTTGGCCTTGCAAAGTTTATTCTACAAGCTTCAATACAGTGACACCAGTGTTGCAACAAAGGAGCTGACAAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATCGGGTTCTTTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACCATACAAAAATTATTTGAAGGGCACCATATGAATTACATAGAATGCATCAATGTAGACTACAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTTAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTCGAAGTTGAAAGTCTTGAGGGGGATAACAAATATCATGCTGAACAGTATGGTTTGCAGGATGCTAAGAAAGGTGTCCTATTTATTGATTTTCCTCCTGTCCTTCAACTCCAGCTAAAAAGATTTGAATATGATTTTATGCGGGATACTATGGTTAAGGTTGGTAGTCCAGTTGACAAAATTCTTTATGCCTTATCTTGA

Predicted protein sequences of Glyma13g16170

Limit To All Plant Sequences

>Glyma13g16170.1   sequence type=predicted peptide   gene model=Glyma13g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVMMPAPIDQQEDEDVLVPDADLPENNHQPMEVVAQPENANTVESQPVEDPPSSRFTWRIDNFSRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQMHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVHDTLIVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPTGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVESLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKVGSPVDKILYALS*

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