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Report for Sequence Feature Glyma13g16072

Feature Type:gene_model
Chromosome:Gm13
Start:19990577
stop:19997311
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g16072
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06600AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985 SoyBaseE_val: 1.00E-93ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
PTHR24006Panther FAMILY NOT NAMED JGI ISS
PTHR24006:SF110Panther SUBFAMILY NOT NAMED JGI ISS
PF00443PFAM Ubiquitin carboxyl-terminal hydrolase JGI ISS
PF12436PFAM Ubiquitin-specific protease 7 JGI ISS
UniRef100_B6V765UniRef Annotation by Michelle Graham. Best UniRef hit: Ubiquitin specific protease 12 n=1 Tax=Nicotiana tabacum RepID=B6V765_TOBAC SoyBaseE_val: 5.00E-96ISS
UniRef100_B6V765UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin specific protease 12 n=1 Tax=Nicotiana tabacum RepID=B6V765_TOBAC SoyBaseE_val: 5.00E-96ISS

Expression Patterns of Glyma13g16072
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g16072 not represented in the dataset
Glyma13g16072 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g16072 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g16072
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g16072
>Glyma13g16072.1   sequence type=CDS   gene model=Glyma13g16072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACCCTCTCTGAACAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGATAATAAAAGAGCATTAGAGGAGCAGTATGGTGGTGAGGAAGAGTTACCACAGACAAATCCCGGATTCAATAACACCCCATTTAAGTTCACCAAATACTCAAATGCTTATATGCTGGTGTATATACGTGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAGAAAGACATTGCAGCACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAGAAAGAGCACAAAAAGAAAGAAAAGGCAGAAGCTCACCTTTATACTATTATAAAGGTGGCACGAGATGAAGAACTTAAAGAGCAGATTGGAAAGGATATATACTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCAGAGTCCAAAAGCAGACATCTTTTAACCTTTTCAAGATGCTGAGGAAGAGGGGATGTAGAAGAGAGGTTTAG
Predicted protein sequences of Glyma13g16072
>Glyma13g16072.1   sequence type=predicted peptide   gene model=Glyma13g16072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAAHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEELKEQIGKDIYFDLVDHDKVRSFRVQKQTSFNLFKMLRKRGCRREV*






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