|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G17920 | AT | Annotation by Michelle Graham. TAIR10: Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765 | SoyBase | E_val: 0 | ISS |
GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0010043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to zinc ion | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
GO:0003871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | SoyBase | N/A | ISS |
GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
GO:0008705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methionine synthase activity | SoyBase | N/A | ISS |
KOG2263 | KOG | Methionine synthase II (cobalamin-independent) | JGI | ISS | |
PTHR19960 | Panther | TEKTIN RELATED | JGI | ISS | |
PTHR19960:SF21 | Panther | 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEIN | JGI | ISS | |
PF01717 | PFAM | Cobalamin-independent synthase, Catalytic domain | JGI | ISS | |
PF08267 | PFAM | Cobalamin-independent synthase, N-terminal domain | JGI | ISS | |
UniRef100_G7J648 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methionine synthase n=1 Tax=Medicago truncatula RepID=G7J648_MEDTR | SoyBase | E_val: 0 | ISS |
UniRef100_I1LXY1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXY1_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma13g15140 not represented in the dataset |
Glyma13g15140 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.13g028400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g15140.2 sequence type=transcript gene model=Glyma13g15140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGAAGCTAGATTATTAATCGTATCAGTGGAAGAAATAAGAAGAGAGAGAAAGACAGATATAGAGAGTGAGAGAGGGTGCGAAGTGAAGTGAGTAGTATAAATGTACAAACTCTCCTCCATTCAGTGTGTGGCGCCGTTTACATTCTCGCTCTGCACTCTCTCTTTCTCATCCTATTCTCTTCGCTTCTCTGTTCGTGCCACTTCTTCTCGAGCAATGGCATCTCATATTGTTGGTTATCCACGCATGGGACCCAAGAGAGAACTTAAGTTTGCTTTGGAATCTTTTTGGGATGGAAAGAGTAGTGCTGAGGAGCTGCAGAAGGTTGCTGCAGACCTTAGGTCAGCCATCTGGAAGCAGATGGCTGATGCTGGAATAAAGTATATTCCTAGCAACACCTTCTCACTTTACGATCAAGTACTGGACACAACAGCCATGCTCGGGGCAGTTCCATCTAGATATAATTGGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTACCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTTCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTTACACATGCCTATGCAGAGCTAGAGTCAAGTTTATCTGGTTTTAATGTTCTGATTGAGACATACTTTGCTGATGTCCCTGCTGAAGCATACAAAACACTCACCTCTTTGAAGGCTGTTACTGCATATGGGTTTGATATTGTTCGTGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAATTTCTTTTCGCTGGTGTTGTTGATGGAAGAAATATTTGGGCCAATAGTCTTGCATCTTCTCTGAACACCCTTCAGGCACTTGGGGACATTGTTGGGAATGACAAGGTTGTGGTTTCCACGTCCTGTTCTCTTCTTCACACTGCAGTTGATCTTGTGAATGAGACTAAATTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGGTTTTTTTTTCTGCTAATGCTGCTGCCTTGGATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCAGGCTGGATTCTCAACAGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTACTGCCAACGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAGCCTCCCATCATCTATGGTGATGTGAGCCGTCCCAAGCCCATGACTGTTTTCTGGTCTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGGTATGAAAATAATTCTTTATGGCTACCTTGCAGGTTTGAATGATCGTTTTTGCTGGATATCTGTTCATTTAACATTATCTTGTTATTAGATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGATCTTGAGAAAGCAGGTATTACTGTCATCCAGATTGATGAAGCTGCTCTAAGAGAAGGTTTACCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACCATTGAGAACTCTAGATCAGACGAGAAGTTACTTTCAGTCTTCCGCGAGGGAGTGAAATATGGTGCTGGCATTGGGCCTGGCATTTATGATATTCACTCACCCAGGATTCCACCAACTGAAGAAATTGCTGACAGGATCAACAAGATGCTTGCGGTTCTTGAAAGCAACATTCTCTGGGTCAACCCAGATTGTGGCCTTAAGACACGCAAATACACTGAGGTGAAACCTGCCCTCACTAATATGGTTGCTGCTGCCAAACTTATTCGCAACCAGTTAGCTAGTGCCAAGTGAGCTGAGAATGAGCCAATAAAGTCATCCATGTGAGATAATGTACTCATGTTGAAAAACCGAACTTTTTGTATTTCCAATAATGTCTTGATATAAGGTTTTGTCCTTCTCCCGAATGATCTTTTTCTGCTCTTGTAGGCAATGCTTTTCAGTATATGATTTTGCTTATGAATAAACGGTTTTATGGTCTATTTTGTTTATTTGGTTTATCTTACACATGTGATTGAACTGTGGGAGAATT
>Glyma13g15140.1 sequence type=CDS gene model=Glyma13g15140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAACTCTCCTCCATTCAGTGTGTGGCGCCGTTTACATTCTCGCTCTGCACTCTCTCTTTCTCATCCTATTCTCTTCGCTTCTCTGTTCGTGCCACTTCTTCTCGAGCAATGGCATCTCATATTGTTGGTTATCCACGCATGGGACCCAAGAGAGAACTTAAGTTTGCTTTGGAATCTTTTTGGGATGGAAAGAGTAGTGCTGAGGAGCTGCAGAAGGTTGCTGCAGACCTTAGGTCAGCCATCTGGAAGCAGATGGCTGATGCTGGAATAAAGTATATTCCTAGCAACACCTTCTCACTTTACGATCAAGTACTGGACACAACAGCCATGCTCGGGGCAGTTCCATCTAGATATAATTGGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTACCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTTCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTTACACATGCCTATGCAGAGCTAGAGTCAAGTTTATCTGGTTTTAATGTTCTGATTGAGACATACTTTGCTGATGTCCCTGCTGAAGCATACAAAACACTCACCTCTTTGAAGGCTGTTACTGCATATGGGTTTGATATTGTTCGTGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAATTTCTTTTCGCTGGTGTTGTTGATGGAAGAAATATTTGGGCCAATAGTCTTGCATCTTCTCTGAACACCCTTCAGGCACTTGGGGACATTGTTGGGAATGACAAGGTTGTGGTTTCCACGTCCTGTTCTCTTCTTCACACTGCAGTTGATCTTGTGAATGAGACTAAATTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGGTTTTTTTTTCTGCTAATGCTGCTGCCTTGGATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCAGGCTGGATTCTCAACAGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTACTGCCAACGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAGCCTCCCATCATCTATGGTGATGTGAGCCGTCCCAAGCCCATGACTGTTTTCTGGTCTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGATTCGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGATCTTGAGAAAGCAGGTATTACTGTCATCCAGATTGATGAAGCTGCTCTAAGAGAAGGTTTACCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACCATTGAGAACTCTAGATCAGACGAGAAGTTACTTTCAGTCTTCCGCGAGGGAGTGAAATATGGTGCTGGCATTGGGCCTGGCATTTATGATATTCACTCACCCAGGATTCCACCAACTGAAGAAATTGCTGACAGGATCAACAAGATGCTTGCGGTTCTTGAAAGCAACATTCTCTGGGTCAACCCAGATTGTGGCCTTAAGACACGCAAATACACTGAGGTGAAACCTGCCCTCACTAATATGGTTGCTGCTGCCAAACTTATTCGCAACCAGTTAGCTAGTGCCAAGTGA >Glyma13g15140.2 sequence type=CDS gene model=Glyma13g15140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAACTCTCCTCCATTCAGTGTGTGGCGCCGTTTACATTCTCGCTCTGCACTCTCTCTTTCTCATCCTATTCTCTTCGCTTCTCTGTTCGTGCCACTTCTTCTCGAGCAATGGCATCTCATATTGTTGGTTATCCACGCATGGGACCCAAGAGAGAACTTAAGTTTGCTTTGGAATCTTTTTGGGATGGAAAGAGTAGTGCTGAGGAGCTGCAGAAGGTTGCTGCAGACCTTAGGTCAGCCATCTGGAAGCAGATGGCTGATGCTGGAATAAAGTATATTCCTAGCAACACCTTCTCACTTTACGATCAAGTACTGGACACAACAGCCATGCTCGGGGCAGTTCCATCTAGATATAATTGGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTACCATTACATTGTTCCTGAATTGGGTCCTGATGTTAAGTTCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTTCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTTACACATGCCTATGCAGAGCTAGAGTCAAGTTTATCTGGTTTTAATGTTCTGATTGAGACATACTTTGCTGATGTCCCTGCTGAAGCATACAAAACACTCACCTCTTTGAAGGCTGTTACTGCATATGGGTTTGATATTGTTCGTGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAATTTCTTTTCGCTGGTGTTGTTGATGGAAGAAATATTTGGGCCAATAGTCTTGCATCTTCTCTGAACACCCTTCAGGCACTTGGGGACATTGTTGGGAATGACAAGGTTGTGGTTTCCACGTCCTGTTCTCTTCTTCACACTGCAGTTGATCTTGTGAATGAGACTAAATTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGGATGAGGTTTTTTTTTCTGCTAATGCTGCTGCCTTGGATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCAGGCTGGATTCTCAACAGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTACTGCCAACGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAGCCTCCCATCATCTATGGTGATGTGAGCCGTCCCAAGCCCATGACTGTTTTCTGGTCTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGGTATGAAAATAATTCTTTATGGCTACCTTGCAGGTTTGAATGA
>Glyma13g15140.1 sequence type=predicted peptide gene model=Glyma13g15140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKLSSIQCVAPFTFSLCTLSFSSYSLRFSVRATSSRAMASHIVGYPRMGPKRELKFALESFWDGKSSAEELQKVAADLRSAIWKQMADAGIKYIPSNTFSLYDQVLDTTAMLGAVPSRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVKFSYASHKAVDEFKEAKVLGVNTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKILPVYREVVAELKAAGATWIQFDEPTLVKDLNTHQLQAFTHAYAELESSLSGFNVLIETYFADVPAEAYKTLTSLKAVTAYGFDIVRGTKTLDLIKQGFPSGKFLFAGVVDGRNIWANSLASSLNTLQALGDIVGNDKVVVSTSCSLLHTAVDLVNETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEVFFSANAAALDSRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDSQQKKLNLPVLPTTTIGSFPQTADLRRVRREFKANKISEEDYIHFIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSLTKRPMKGMLTGPVTILNWSFVRDDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEEAFYLNWAVHSFRITNCGVEDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGIYDIHSPRIPPTEEIADRINKMLAVLESNILWVNPDCGLKTRKYTEVKPALTNMVAAAKLIRNQLASAK* >Glyma13g15140.2 sequence type=predicted peptide gene model=Glyma13g15140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKLSSIQCVAPFTFSLCTLSFSSYSLRFSVRATSSRAMASHIVGYPRMGPKRELKFALESFWDGKSSAEELQKVAADLRSAIWKQMADAGIKYIPSNTFSLYDQVLDTTAMLGAVPSRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVKFSYASHKAVDEFKEAKVLGVNTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKILPVYREVVAELKAAGATWIQFDEPTLVKDLNTHQLQAFTHAYAELESSLSGFNVLIETYFADVPAEAYKTLTSLKAVTAYGFDIVRGTKTLDLIKQGFPSGKFLFAGVVDGRNIWANSLASSLNTLQALGDIVGNDKVVVSTSCSLLHTAVDLVNETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEVFFSANAAALDSRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDSQQKKLNLPVLPTTTIGSFPQTADLRRVRREFKANKISEEDYIHFIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSLTKRPMKGMLTGPVTILNWSFVRDDQPRYENNSLWLPCRFE*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||