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Report for Sequence Feature Glyma13g14900

Feature Type:gene_model
Chromosome:Gm13
Start:18669665
stop:18673798
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g14900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63470AT Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502 SoyBaseE_val: 7.00E-171ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
KOG1282 KOG Serine carboxypeptidases (lysosomal cathepsin A) JGI ISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PTHR11802:SF8Panther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS) JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_G7IEQ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase II-3 n=1 Tax=Medicago truncatula RepID=G7IEQ6_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BAB6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BAB6 related cluster n=1 Tax=unknown RepID=UPI000233BAB6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g14900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g14900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g028500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g14900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g14900
>Glyma13g14900.1   sequence type=CDS   gene model=Glyma13g14900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAACTTTCTCTGCATGCTTGTTTTCTCAATTTGAGCCTCTTGGTTCTTCTTCCCTATAGCAAAGCCAGCCAGGCTGACAAACTTGAAGAGTTGATTCTATCTAGGAGTTCACAGAAGCCTCCAGTGACCCTTTCTTGGGCAGAGGAAGATGCATTGAAAACTCATTCTTCTGCTTATGTTGCATCCCAAGAGGGGCAAAAGCAAGCTGACAAGATTGCGGCATTGCCTGGCCAACCCTATGGGGTGAATTTTGACCAATATTCCGGCTATGTCACTGTTGATCCAAAGGCTGGAAGAGCACTTTTCTATTATTTTGTGGAATCTCCATATAACCCTTCAACTAAACCTTTAGTTTTGTGGCTAAATGGAGGACCTGGTTGTTCCTCATTGGGGTATGGTGCCTTTGAGGAATTGGGACCTTTCAGAATAAACTCCGATGGCAAAACACTATATCGCAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCTTGGAATCCCCTGCTGGGGTGGGCTTTTCCTACTCAAACACTACTTCTGACTATGATCATTCAGGAGATAAGCCTACTGCAAAAGATGCATATGTTTTCCTGATCAATTGGTTAGAGAGGTTTCCAGAGTACAAAACCCGCAATTTTTACATAACTGGAGAAAGCTATGCCGGACATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATTCAGTCAACAAAATATTAACCTCAAAGGCATTGCTATAGGGAACGCTTGGATTGATGATGTTACAGGTACAAAGGGGATAGTTGATTACTTATGGACTCATGCTTTGAACTCGGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTACAGTTCTGAAAACATTTCGCAAATATGTTCCAATGCAACAAGAAGGGCATTAACTGAAAAAGGAAACATAGACTTTTATAACATCTATGCTCCACTGTGTCATGACTCTTCTCTCAAAAATGAATCATCATCTGGTTCTGTATATGATTTTGACCCGTGTTCTGATTACTACGGGGAAGCCTATCTAAATAGGCCAGAGGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGTCCCATTGCAGTGATTTAATAGACTGGAACGACAGCCCAACTACCATCCTACCTGTCATCAAGTATCTCACCGACAGTAACATTGTATTGTGGATATACAGTGGTGATACGGATGCAAGGGTGCCAGTTACATCTTCCAGATATGCAATCAACACCCTCAAGCTACCTATCCAGGTTCCTTGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGAAATACAAAGGAGTGACATTTGTTACAGTAAGAGGAGCAGGACATCTGGTTCCTAGCTGGCAACCAGCACGGGCTTTGACCTTGATCTTCTCATTCCTCTACGGAAGCCTGCCTCCTGCTTCACCATGGAAGGGTTACTAA
Predicted protein sequences of Glyma13g14900
>Glyma13g14900.1   sequence type=predicted peptide   gene model=Glyma13g14900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKLSLHACFLNLSLLVLLPYSKASQADKLEELILSRSSQKPPVTLSWAEEDALKTHSSAYVASQEGQKQADKIAALPGQPYGVNFDQYSGYVTVDPKAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDHSGDKPTAKDAYVFLINWLERFPEYKTRNFYITGESYAGHYVPQLAYTILVNNKFSQQNINLKGIAIGNAWIDDVTGTKGIVDYLWTHALNSDQTHELIEKYCDYSSENISQICSNATRRALTEKGNIDFYNIYAPLCHDSSLKNESSSGSVYDFDPCSDYYGEAYLNRPEVQLALHAKPTNWSHCSDLIDWNDSPTTILPVIKYLTDSNIVLWIYSGDTDARVPVTSSRYAINTLKLPIQVPWRPWYSGNEVGGYVVKYKGVTFVTVRGAGHLVPSWQPARALTLIFSFLYGSLPPASPWKGY*






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